PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G243500.2

Common Name

B456_010G243500, LOC105772786

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1723aa MW: 194933 Da PI: 5.0827

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G243500.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.9	4.2e-19	29	84	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR kekk Gorai.010G243500.2 29 PKRQMKTPFQLEALEKAYALETYPSEATRAELSEKLGLSDRQLQMWFCHRRLKEKK 84 69*****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-18	14	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.84E-17	18	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.584	25	85	IPR001356	Homeobox domain
SMART	SM00389	6.7E-18	27	89	IPR001356	Homeobox domain
Pfam	PF00046	9.6E-17	29	84	IPR001356	Homeobox domain
CDD	cd00086	2.46E-14	30	84	No hit	No description
PROSITE profile	PS50827	16.662	515	574	IPR018501	DDT domain
SMART	SM00571	3.6E-21	515	574	IPR018501	DDT domain
Pfam	PF02791	7.3E-16	516	571	IPR018501	DDT domain
Pfam	PF05066	1.5E-14	697	764	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.9E-8	916	960	IPR028942	WHIM1 domain
Pfam	PF15613	2.3E-12	1101	1173	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1723 aa Download sequence Send to blast
MEAGSEGENN QINNPNKNVS SSNEGNVKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL 60 SEKLGLSDRQ LQMWFCHRRL KEKKDTPTKK PRKVAALPPE SPIDELRAGP GPDYGSGSGS 120 GSSPNMDTRK LGGSSSRGMT EDVQTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML 180 GMEFDPLPPD AFGAIPEPHN RSGHPYESKV YERHDGWSSK VAARAFHEYQ FLPEHSSLRS 240 DAYGLVTQSH FHESPVSGVR GRASPFVHGE EPLSRIHGIQ ERESLTNGRN APSICHPVLG 300 SEDLYMLSAE QTLNNDADPR IDRKRKVSSL SDETRIAKEV EAHENRIRKE LEKLDHKRRK 360 SEERMRKEME RLERERRKEE ERLMREKQRE EERTQREQKR EMERRQKFLQ KEYLRAEKKR 420 QKEELRRERE EERRRVAREK ATARKIAKES MDLLEDEQLE LMELAAARKG IYSIIHLEHD 480 TLQNLESFRD SLSVFPPKSV QLKRPFDIQP WIDSEENVGN LLMAWRFLIT FADILRLWPF 540 TLDEFVQAFH DYDSRLLGEI HVTLLRSIIK DIEDVARTPA TGLGMNQYCA ANPEGGHLQI 600 VEGAYSWGFD IRNWQHHLNP LTWPEIFRQL AISAGFGPQL KKQKATWTYT GDNDEGKGCA 660 DVVSTLRNGS AAENAFALMR EKGLLLPRRS RHRLTPGTVK FAAFHVLSLE GSKGLTVLEL 720 ADKIQKSGLR DLTTSKTPEA SISVALTRDG KLFERIAPST YCVRPAYRKD PADAEAILAT 780 ARRKIRQFEN GFLGGEDADE VERDEVERDD VERDEDSECD VDEDPEVDDI ATPSNANKVA 840 DYPKNEVNTC LGSKNFHASA DDELDVQSEF DKDFSPFASN TVKVDNDPSN SGQYVASEEN 900 GTGNPDQQNI EIDESESGES WIQGLSEGEY SHLSVEERLN ALVALIGIAN EGNSIRAVLE 960 DRLEAANALK KQMWAEAQLD KSRLKEECII KMDFPPVMGI KTDAQLPNSA VEGSRSPFPV 1020 ADNKNDEASP SIPEDQKPLL CSQNVQNDLN SYPAERALVL QDASMGPENF SAQQHGYASK 1080 RSRSQLKSYI AHRAEEMYVY RSLPLGQDRR RNRYWQFVAS ASKNDPCSGQ IFVELHDGKW 1140 RLIDSEEAFD ALLASLDARG IRESHLRIML RKIESSFKEN VRRNLHSARA MGRSGYSENE 1200 ASEIDSGPDF TGSFDSPRSG ICGLNSDASG TLPCFKIQLG RNENERKSAM ERYQDFQRWM 1260 WNECYNSSTL CAMKYEKKRC TQLLAVCDTC LGSHMPEDVH CSYCHQTFRA LNNNFNFYDH 1320 EIRCKENRKL DNKDKRTLDS SLPMGINLLK SSCALVEVSI PPEALGSMWA EGQRKMWGRK 1380 LNASSSTDEL LKLLTQLESA IKRDYLSSNF ETTRELLGSS LQSENDSSTV SVLPWIPQTT 1440 PAVALRLLEL DSSIMYVKPE KVEPPENREA RASYIKLPSR TSLFIKNKEL ELKELDQDEP 1500 MKENFTDLSN SKRSSYKRGR GAREQGSGRK WQRKGSGSKS DAGKQIVGEN NNLSFQLKQQ 1560 SQRTGQSSGH GRRTVRKRAE SRAANSTIMA RMSDVVKPKA DAVSVRDLDE EWRTERFGMM 1620 ATVNPPDSNS TEEESDDDGQ GEGYGQGNWE LDLNGASNGW SREPMEASYE EDDTYEDDNG 1680 IEQVVEEESD GDLEMSDASD DVPNETRNDI GLDSADSEDY SD*

Sequence ? help Back to Top

Protein Sequence Length: 1723 aa Download sequence Send to blast

MEAGSEGENN QINNPNKNVS SSNEGNVKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL  60
SEKLGLSDRQ LQMWFCHRRL KEKKDTPTKK PRKVAALPPE SPIDELRAGP GPDYGSGSGS  120
GSSPNMDTRK LGGSSSRGMT EDVQTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML  180
GMEFDPLPPD AFGAIPEPHN RSGHPYESKV YERHDGWSSK VAARAFHEYQ FLPEHSSLRS  240
DAYGLVTQSH FHESPVSGVR GRASPFVHGE EPLSRIHGIQ ERESLTNGRN APSICHPVLG  300
SEDLYMLSAE QTLNNDADPR IDRKRKVSSL SDETRIAKEV EAHENRIRKE LEKLDHKRRK  360
SEERMRKEME RLERERRKEE ERLMREKQRE EERTQREQKR EMERRQKFLQ KEYLRAEKKR  420
QKEELRRERE EERRRVAREK ATARKIAKES MDLLEDEQLE LMELAAARKG IYSIIHLEHD  480
TLQNLESFRD SLSVFPPKSV QLKRPFDIQP WIDSEENVGN LLMAWRFLIT FADILRLWPF  540
TLDEFVQAFH DYDSRLLGEI HVTLLRSIIK DIEDVARTPA TGLGMNQYCA ANPEGGHLQI  600
VEGAYSWGFD IRNWQHHLNP LTWPEIFRQL AISAGFGPQL KKQKATWTYT GDNDEGKGCA  660
DVVSTLRNGS AAENAFALMR EKGLLLPRRS RHRLTPGTVK FAAFHVLSLE GSKGLTVLEL  720
ADKIQKSGLR DLTTSKTPEA SISVALTRDG KLFERIAPST YCVRPAYRKD PADAEAILAT  780
ARRKIRQFEN GFLGGEDADE VERDEVERDD VERDEDSECD VDEDPEVDDI ATPSNANKVA  840
DYPKNEVNTC LGSKNFHASA DDELDVQSEF DKDFSPFASN TVKVDNDPSN SGQYVASEEN  900
GTGNPDQQNI EIDESESGES WIQGLSEGEY SHLSVEERLN ALVALIGIAN EGNSIRAVLE  960
DRLEAANALK KQMWAEAQLD KSRLKEECII KMDFPPVMGI KTDAQLPNSA VEGSRSPFPV  1020
ADNKNDEASP SIPEDQKPLL CSQNVQNDLN SYPAERALVL QDASMGPENF SAQQHGYASK  1080
RSRSQLKSYI AHRAEEMYVY RSLPLGQDRR RNRYWQFVAS ASKNDPCSGQ IFVELHDGKW  1140
RLIDSEEAFD ALLASLDARG IRESHLRIML RKIESSFKEN VRRNLHSARA MGRSGYSENE  1200
ASEIDSGPDF TGSFDSPRSG ICGLNSDASG TLPCFKIQLG RNENERKSAM ERYQDFQRWM  1260
WNECYNSSTL CAMKYEKKRC TQLLAVCDTC LGSHMPEDVH CSYCHQTFRA LNNNFNFYDH  1320
EIRCKENRKL DNKDKRTLDS SLPMGINLLK SSCALVEVSI PPEALGSMWA EGQRKMWGRK  1380
LNASSSTDEL LKLLTQLESA IKRDYLSSNF ETTRELLGSS LQSENDSSTV SVLPWIPQTT  1440
PAVALRLLEL DSSIMYVKPE KVEPPENREA RASYIKLPSR TSLFIKNKEL ELKELDQDEP  1500
MKENFTDLSN SKRSSYKRGR GAREQGSGRK WQRKGSGSKS DAGKQIVGEN NNLSFQLKQQ  1560
SQRTGQSSGH GRRTVRKRAE SRAANSTIMA RMSDVVKPKA DAVSVRDLDE EWRTERFGMM  1620
ATVNPPDSNS TEEESDDDGQ GEGYGQGNWE LDLNGASNGW SREPMEASYE EDDTYEDDNG  1680
IEQVVEEESD GDLEMSDASD DVPNETRNDI GLDSADSEDY SD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	84	RRLKEKKD
2	356	377	KRRKSEERMRKEMERLERERRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX582386	1e-103	JX582386.1 Gossypium hirsutum clone NBRI_GE15206 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449690.1	0.0	PREDICTED: uncharacterized protein LOC105772786 isoform X3
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A0D2UIA6	0.0	A0A0D2UIA6_GOSRA; Uncharacterized protein
STRING	Gorai.010G243500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	Gorai.010G243500.2
Entrez Gene	105772786

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]