PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G243500.1

Common Name

B456_010G243500, LOC105772786

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1750aa MW: 197628 Da PI: 5.1024

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G243500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.3e-19	29	84	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR kekk Gorai.010G243500.1 29 PKRQMKTPFQLEALEKAYALETYPSEATRAELSEKLGLSDRQLQMWFCHRRLKEKK 84 69*****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-18	14	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.84E-17	18	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.584	25	85	IPR001356	Homeobox domain
SMART	SM00389	6.7E-18	27	89	IPR001356	Homeobox domain
Pfam	PF00046	9.8E-17	29	84	IPR001356	Homeobox domain
CDD	cd00086	2.13E-14	30	84	No hit	No description
SMART	SM00571	3.6E-21	542	601	IPR018501	DDT domain
PROSITE profile	PS50827	16.662	542	601	IPR018501	DDT domain
Pfam	PF02791	7.5E-16	543	598	IPR018501	DDT domain
Pfam	PF05066	1.6E-14	724	791	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.9E-8	943	987	IPR028942	WHIM1 domain
Pfam	PF15613	2.4E-12	1128	1200	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1750 aa Download sequence Send to blast
MEAGSEGENN QINNPNKNVS SSNEGNVKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL 60 SEKLGLSDRQ LQMWFCHRRL KEKKDTPTKK PRKVAALPPE SPIDELRAGP GPDYGSGSGS 120 GSSPNMDTRK LGGSSSRGMT EDVQTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML 180 GMEFDPLPPD AFGAIPEPHN RSGHPYESKV YERHDGWSSK VAARAFHEYQ FLPEHSSLRS 240 DAYGLVTQSH FHESPVSGVR GRASPFVHGE EPLSRIHGIQ GHGSRALVLP QQGIIPSSSH 300 VADDSLAERE SLTNGRNAPS ICHPVLGSED LYMLSAEQTL NNDADPRIDR KRKVSSLSDE 360 TRIAKEVEAH ENRIRKELEK LDHKRRKSEE RMRKEMERLE RERRKEEERL MREKQREEER 420 TQREQKREME RRQKFLQKEY LRAEKKRQKE ELRREREEER RRVAREKATA RKIAKESMDL 480 LEDEQLELME LAAARKGIYS IIHLEHDTLQ NLESFRDSLS VFPPKSVQLK RPFDIQPWID 540 SEENVGNLLM AWRFLITFAD ILRLWPFTLD EFVQAFHDYD SRLLGEIHVT LLRSIIKDIE 600 DVARTPATGL GMNQYCAANP EGGHLQIVEG AYSWGFDIRN WQHHLNPLTW PEIFRQLAIS 660 AGFGPQLKKQ KATWTYTGDN DEGKGCADVV STLRNGSAAE NAFALMREKG LLLPRRSRHR 720 LTPGTVKFAA FHVLSLEGSK GLTVLELADK IQKSGLRDLT TSKTPEASIS VALTRDGKLF 780 ERIAPSTYCV RPAYRKDPAD AEAILATARR KIRQFENGFL GGEDADEVER DEVERDDVER 840 DEDSECDVDE DPEVDDIATP SNANKVADYP KNEVNTCLGS KNFHASADDE LDVQSEFDKD 900 FSPFASNTVK VDNDPSNSGQ YVASEENGTG NPDQQNIEID ESESGESWIQ GLSEGEYSHL 960 SVEERLNALV ALIGIANEGN SIRAVLEDRL EAANALKKQM WAEAQLDKSR LKEECIIKMD 1020 FPPVMGIKTD AQLPNSAVEG SRSPFPVADN KNDEASPSIP EDQKPLLCSQ NVQNDLNSYP 1080 AERALVLQDA SMGPENFSAQ QHGYASKRSR SQLKSYIAHR AEEMYVYRSL PLGQDRRRNR 1140 YWQFVASASK NDPCSGQIFV ELHDGKWRLI DSEEAFDALL ASLDARGIRE SHLRIMLRKI 1200 ESSFKENVRR NLHSARAMGR SGYSENEASE IDSGPDFTGS FDSPRSGICG LNSDASGTLP 1260 CFKIQLGRNE NERKSAMERY QDFQRWMWNE CYNSSTLCAM KYEKKRCTQL LAVCDTCLGS 1320 HMPEDVHCSY CHQTFRALNN NFNFYDHEIR CKENRKLDNK DKRTLDSSLP MGINLLKSSC 1380 ALVEVSIPPE ALGSMWAEGQ RKMWGRKLNA SSSTDELLKL LTQLESAIKR DYLSSNFETT 1440 RELLGSSLQS ENDSSTVSVL PWIPQTTPAV ALRLLELDSS IMYVKPEKVE PPENREARAS 1500 YIKLPSRTSL FIKNKELELK ELDQDEPMKE NFTDLSNSKR SSYKRGRGAR EQGSGRKWQR 1560 KGSGSKSDAG KQIVGENNNL SFQLKQQSQR TGQSSGHGRR TVRKRAESRA ANSTIMARMS 1620 DVVKPKADAV SVRDLDEEWR TERFGMMATV NPPDSNSTEE ESDDDGQGEG YGQGNWELDL 1680 NGASNGWSRE PMEASYEEDD TYEDDNGIEQ VVEEESDGDL EMSDASDDVP NETRNDIGLD 1740 SADSEDYSD*

Sequence ? help Back to Top

Protein Sequence Length: 1750 aa Download sequence Send to blast

MEAGSEGENN QINNPNKNVS SSNEGNVKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL  60
SEKLGLSDRQ LQMWFCHRRL KEKKDTPTKK PRKVAALPPE SPIDELRAGP GPDYGSGSGS  120
GSSPNMDTRK LGGSSSRGMT EDVQTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML  180
GMEFDPLPPD AFGAIPEPHN RSGHPYESKV YERHDGWSSK VAARAFHEYQ FLPEHSSLRS  240
DAYGLVTQSH FHESPVSGVR GRASPFVHGE EPLSRIHGIQ GHGSRALVLP QQGIIPSSSH  300
VADDSLAERE SLTNGRNAPS ICHPVLGSED LYMLSAEQTL NNDADPRIDR KRKVSSLSDE  360
TRIAKEVEAH ENRIRKELEK LDHKRRKSEE RMRKEMERLE RERRKEEERL MREKQREEER  420
TQREQKREME RRQKFLQKEY LRAEKKRQKE ELRREREEER RRVAREKATA RKIAKESMDL  480
LEDEQLELME LAAARKGIYS IIHLEHDTLQ NLESFRDSLS VFPPKSVQLK RPFDIQPWID  540
SEENVGNLLM AWRFLITFAD ILRLWPFTLD EFVQAFHDYD SRLLGEIHVT LLRSIIKDIE  600
DVARTPATGL GMNQYCAANP EGGHLQIVEG AYSWGFDIRN WQHHLNPLTW PEIFRQLAIS  660
AGFGPQLKKQ KATWTYTGDN DEGKGCADVV STLRNGSAAE NAFALMREKG LLLPRRSRHR  720
LTPGTVKFAA FHVLSLEGSK GLTVLELADK IQKSGLRDLT TSKTPEASIS VALTRDGKLF  780
ERIAPSTYCV RPAYRKDPAD AEAILATARR KIRQFENGFL GGEDADEVER DEVERDDVER  840
DEDSECDVDE DPEVDDIATP SNANKVADYP KNEVNTCLGS KNFHASADDE LDVQSEFDKD  900
FSPFASNTVK VDNDPSNSGQ YVASEENGTG NPDQQNIEID ESESGESWIQ GLSEGEYSHL  960
SVEERLNALV ALIGIANEGN SIRAVLEDRL EAANALKKQM WAEAQLDKSR LKEECIIKMD  1020
FPPVMGIKTD AQLPNSAVEG SRSPFPVADN KNDEASPSIP EDQKPLLCSQ NVQNDLNSYP  1080
AERALVLQDA SMGPENFSAQ QHGYASKRSR SQLKSYIAHR AEEMYVYRSL PLGQDRRRNR  1140
YWQFVASASK NDPCSGQIFV ELHDGKWRLI DSEEAFDALL ASLDARGIRE SHLRIMLRKI  1200
ESSFKENVRR NLHSARAMGR SGYSENEASE IDSGPDFTGS FDSPRSGICG LNSDASGTLP  1260
CFKIQLGRNE NERKSAMERY QDFQRWMWNE CYNSSTLCAM KYEKKRCTQL LAVCDTCLGS  1320
HMPEDVHCSY CHQTFRALNN NFNFYDHEIR CKENRKLDNK DKRTLDSSLP MGINLLKSSC  1380
ALVEVSIPPE ALGSMWAEGQ RKMWGRKLNA SSSTDELLKL LTQLESAIKR DYLSSNFETT  1440
RELLGSSLQS ENDSSTVSVL PWIPQTTPAV ALRLLELDSS IMYVKPEKVE PPENREARAS  1500
YIKLPSRTSL FIKNKELELK ELDQDEPMKE NFTDLSNSKR SSYKRGRGAR EQGSGRKWQR  1560
KGSGSKSDAG KQIVGENNNL SFQLKQQSQR TGQSSGHGRR TVRKRAESRA ANSTIMARMS  1620
DVVKPKADAV SVRDLDEEWR TERFGMMATV NPPDSNSTEE ESDDDGQGEG YGQGNWELDL  1680
NGASNGWSRE PMEASYEEDD TYEDDNGIEQ VVEEESDGDL EMSDASDDVP NETRNDIGLD  1740
SADSEDYSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	84	RRLKEKKD
2	383	404	KRRKSEERMRKEMERLERERRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX582386	1e-103	JX582386.1 Gossypium hirsutum clone NBRI_GE15206 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449688.1	0.0	PREDICTED: uncharacterized protein LOC105772786 isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A0D2UK26	0.0	A0A0D2UK26_GOSRA; Uncharacterized protein
STRING	Gorai.010G243500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8347	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	Gorai.010G243500.1
Entrez Gene	105772786

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]