PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G240700.1

Common Name

B456_010G240700, LOC105772789

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

BES1

Protein Properties

Length: 323aa MW: 34628.3 Da PI: 7.764

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G240700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	211.3	2.4e-65	2	147	1	150
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 ++++r+ptwkErEnnkrRERrRRaiaaki+aGLR++Gnyklpk++DnneVlkALc eAGw+ve+DGtty+kg+kp +++++ g sasasp+ Gorai.010G240700.1 2 TSGTRMPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCDEAGWTVEEDGTTYKKGCKPVDRMDILGGSASASPC 92 5899************************************************************************************* PP DUF822 92 sslqsslkssalaspvesysaspksssfpspssldsislasa....asllpvlsvlslvsssl 150 ss++ +sp++sy++sp sssfpsp+s+ + + +sl+p+l++ls+ sss+ Gorai.010G240700.1 93 SSYH--------PSPCASYNPSPGSSSFPSPASSHYRANGNGnadaNSLIPWLKNLSSGSSSA 147 ........**************9987665444335677********9977664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.2E-66	3	141	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MTSGTRMPTW KERENNKRRE RRRRAIAAKI FAGLRMYGNY KLPKHCDNNE VLKALCDEAG 60 WTVEEDGTTY KKGCKPVDRM DILGGSASAS PCSSYHPSPC ASYNPSPGSS SFPSPASSHY 120 RANGNGNADA NSLIPWLKNL SSGSSSASSK LAHHLYFAGG SISAPVTPPL SSPTSRTPRT 180 RNDWDETTGG SARTGQRHCY LPSSTPPSPN HQVFPDPEWL SSGPTSPTFS LVSRNPFGFK 240 DEALSAGGSR MWTPGQSGTC SPAFPAGVDQ TSDVPMSDVI AAEFAFGSNF TGLVKPWEGE 300 MIHEECVADD DLELTLGNSK TR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	3e-23	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	3e-23	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	3e-23	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	3e-23	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449695.1	0.0	PREDICTED: BES1/BZR1 homolog protein 4-like
Swissprot	Q9ZV88	1e-130	BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBL	A0A0D2UJY7	0.0	A0A0D2UJY7_GOSRA; Uncharacterized protein
STRING	Gorai.010G240700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1917	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	1e-108	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Phytozome	Gorai.010G240700.1
Entrez Gene	105772789

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]