PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G235700.1
Common NameB456_010G235700, LOC105772866
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 454aa    MW: 50357.3 Da    PI: 9.9971
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G235700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.42.2e-14139226186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ + +++ ++++pk   qCk++++ ++k+yk +k+    +  +  s++++f++l+
  Gorai.010G235700.1 139 CWSEGATEVLIDAWGERYLELSRGNLKQKHWKEVADIVsSREDYTKTPKtdiQCKNRIDTVKKKYKLEKAKVAAG--GGPSKWVFFEKLD 226
                         7*************************************866677776654449*****************99997..67778******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-25137228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MQCLLHRRRH FPSRPTLLSV PSTDNKKTNE TENKMPKKKN SRRNPKFFPF FSSEIIEFSG  60
SQMEEDEEIQ SYPSVAATGS SSPSSPSPAS NSRITVTVAA APPPNSPPTD EPHEHEKAIV  120
LALPPPQKPK SNGGGREDCW SEGATEVLID AWGERYLELS RGNLKQKHWK EVADIVSSRE  180
DYTKTPKTDI QCKNRIDTVK KKYKLEKAKV AAGGGPSKWV FFEKLDQLIG PTAKVSASTT  240
AAVSGGGGSS SGGSADFLSK VPMGIPVGIR SSLNPFRVSQ VRQQQQQQQQ QQQQEKQPRM  300
VVLKNQRKQG PVDMDSEDDD DDGDDDADSF DSLPPPPTGK RARRVVHNKS VNAGEKRRKW  360
GNSVKELTQA ILRFGEAYEQ AETAKLQQVV EMEKQRMKFA KELELQRMQF FMKTQLEISQ  420
LKQGKKGVGI FNSGNHHSKA NNNNNNNNSD SSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354359EKRRKW
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5270461e-150HQ527046.1 Gossypium herbaceum clone NBRI_A_EYI1BW401A822Y simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449798.10.0PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG81e-113ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0D2UHV90.0A0A0D2UHV9_GOSRA; Uncharacterized protein
STRINGGorai.010G235700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-61sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]