PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G232200.1 | ||||||||
Common Name | B456_010G232200, LOC105772161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 156aa MW: 17821.6 Da PI: 8.1538 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116 | 2.3e-36 | 16 | 111 | 2 | 96 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 C aCk++rr+C++dC +ap fp++++++f+n+hklFG++nv+kl+++l +++++++am+++v e+++rardPv G++++i++lq+q+e+++ Gorai.010G232200.1 16 CLACKYQRRRCPADCSFAPNFPHDREQQFKNMHKLFGMANVIKLIRTLkDPSKKDIAMRTIVVESDMRARDPVGGCYRIIQELQHQIECKE 106 9***********************************************667779************************************* PP DUF260 92 aelal 96 a+l++ Gorai.010G232200.1 107 AQLDK 111 *9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.338 | 14 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.9E-35 | 16 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MSISTSGNTT VATEDCLACK YQRRRCPADC SFAPNFPHDR EQQFKNMHKL FGMANVIKLI 60 RTLKDPSKKD IAMRTIVVES DMRARDPVGG CYRIIQELQH QIECKEAQLD KIYYTIANCR 120 AQNAHCLQLQ TQKIDDGDHC QMMHKLPLIG FETEK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-22 | 8 | 113 | 4 | 108 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-22 | 8 | 113 | 4 | 108 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012448927.1 | 1e-114 | PREDICTED: LOB domain-containing protein 22-like | ||||
Swissprot | Q9LRW1 | 1e-33 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A0D2RCG4 | 1e-113 | A0A0D2RCG4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G232200.1 | 1e-114 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM36592 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 5e-36 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G232200.1 |
Entrez Gene | 105772161 |
Publications ? help Back to Top | |||
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