PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G232100.1 | ||||||||
Common Name | B456_010G232100, LOC105772397 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 171aa MW: 19408.4 Da PI: 7.9918 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.1 | 2.2e-31 | 16 | 113 | 2 | 96 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFG..asnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleq 89 C aCk++rr+C++ C++apyfp+ ++++++n+hklFG + nv+kl++++ +++++++a+++++ ++++ra+dPv G+++vi++lq+q+e+ Gorai.010G232100.1 16 CLACKYQRRRCPAYCPFAPYFPHGHEQQLKNMHKLFGsgMVNVIKLVRTIeDPSKKDIAIRTIMVQSDMRAKDPVGGCYRVIQELQHQIEC 106 9***********************************733789********5667799********************************** PP DUF260 90 lkaelal 96 ++ael++ Gorai.010G232100.1 107 TQAELDQ 113 ****976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.806 | 14 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-30 | 16 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MSIPTSGNTA IVTEDCLACK YQRRRCPAYC PFAPYFPHGH EQQLKNMHKL FGSGMVNVIK 60 LVRTIEDPSK KDIAIRTIMV QSDMRAKDPV GGCYRVIQEL QHQIECTQAE LDQIYYTIAI 120 CRTQNAHRLQ MQKIDDGDRC QMMNKLPLIG FETEKLANLS IKSDDNIGEK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-19 | 16 | 115 | 12 | 108 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-19 | 16 | 115 | 12 | 108 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012449125.1 | 1e-126 | PREDICTED: LOB domain-containing protein 22-like | ||||
Swissprot | Q9LRW1 | 2e-30 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A0D2UJJ8 | 1e-125 | A0A0D2UJJ8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G232100.1 | 1e-125 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22102 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 8e-33 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G232100.1 |
Entrez Gene | 105772397 |
Publications ? help Back to Top | |||
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