PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G228000.1

Common Name

B456_010G228000, LOC105772982

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 400aa MW: 46004.2 Da PI: 4.3693

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G228000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.5	1.3e-16	168	252	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e+ +L++a ++ + +r++l+ W+ev++k++e ++er+ +qC+++++ l+k+ykk+k++ + t ++ss+++yf++++ Gorai.010G228000.1 168 WIERETFVLLDAWGDLFLQRGRKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKEKAMLAE-TGGTSSKWVYFKKMD 252 ***********************************762678**********************9.699999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.6E-21	167	254	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.3E-4	186	233	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MDNIEDNARH PSNPYGVGHQ PGYRSSNHQK LSVSNNPYVR PTGNQYVVDD EDEEEEENDE 60 DLEEEENRNR NNGVRYVGKD MDDVDDDDND ELDDDEDGDE DDYDENGDKQ KGYDGKNDDV 120 DMERHPKKRK LKSLLSSYEF APRVPAPAVS APSVPKPSFG GRNSLTDWIE RETFVLLDAW 180 GDLFLQRGRK SLRSEEWQEV AEKVSEVSKI ERTDTQCRNR LDTLKKKYKK EKAMLAETGG 240 TSSKWVYFKK MDMLMSTPPQ QGGLSCGLDS GEYVFMNPRV YLNRANGLDE MRDSPADSES 300 ADSEEDVSDG LPPKKRRFGR QYDEGSSFRL LADLIQKFSD TYEKIEDSKR QQMLELEKMR 360 MDFHRELEMQ KQHIMERAQA EIAKIQQQAD DEENEKASG*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MDNIEDNARH PSNPYGVGHQ PGYRSSNHQK LSVSNNPYVR PTGNQYVVDD EDEEEEENDE  60
DLEEEENRNR NNGVRYVGKD MDDVDDDDND ELDDDEDGDE DDYDENGDKQ KGYDGKNDDV  120
DMERHPKKRK LKSLLSSYEF APRVPAPAVS APSVPKPSFG GRNSLTDWIE RETFVLLDAW  180
GDLFLQRGRK SLRSEEWQEV AEKVSEVSKI ERTDTQCRNR LDTLKKKYKK EKAMLAETGG  240
TSSKWVYFKK MDMLMSTPPQ QGGLSCGLDS GEYVFMNPRV YLNRANGLDE MRDSPADSES  300
ADSEEDVSDG LPPKKRRFGR QYDEGSSFRL LADLIQKFSD TYEKIEDSKR QQMLELEKMR  360
MDFHRELEMQ KQHIMERAQA EIAKIQQQAD DEENEKASG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.732	1e-119	seedling

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449978.1	0.0	PREDICTED: trihelix transcription factor ASIL1-like
TrEMBL	A0A0D2UJF0	0.0	A0A0D2UJF0_GOSRA; Uncharacterized protein
TrEMBL	A0A2D0UVD7	0.0	A0A2D0UVD7_GOSHI; Myb/SANT like protein 1
STRING	Gorai.010G228000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15605	9	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-59	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.010G228000.1
Entrez Gene	105772982

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]