PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G212500.1
Common NameB456_010G212500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 560aa    MW: 60967.8 Da    PI: 4.5763
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G212500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-174087148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT  Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l
  Gorai.010G212500.1 40 KGPWTSAEDAILIDYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 87
                        79******************************************9986 PP
2Myb_DNA-binding53.94.1e-1793136146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++T+eE++l++++++++G++ W++ a++++ gRt++++k++w++
  Gorai.010G212500.1  93 KGAFTQEEEQLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 136
                         799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0543587IPR017930Myb domain
SMARTSM007172.4E-153989IPR001005SANT/Myb domain
SuperFamilySSF466892.58E-3039134IPR009057Homeodomain-like
PfamPF002492.4E-154087IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-244194IPR009057Homeodomain-like
CDDcd001676.47E-124287No hitNo description
PROSITE profilePS5129426.87288142IPR017930Myb domain
SMARTSM007172.3E-1792140IPR001005SANT/Myb domain
PfamPF002494.5E-1693136IPR001005SANT/Myb domain
CDDcd001671.12E-1295136No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2695141IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MSHTKNERED GILSKDQTES SLIDDGNCGG GTGGGIVLKK GPWTSAEDAI LIDYVKKHGE  60
GNWNAVQKHS GLFRCGKSCR LRWANHLRPN LKKGAFTQEE EQLIIELHAK MGNKWARMAA  120
HLPGRTDNEI KNYWNTRIKR RQRAGLPLYP PEVCLQALQD SHGTSAVNGG DEGPHDILQN  180
NSYEIPDVIF DSLKTSQNVL PYVPELPDIS TSSMLMKGLG SQYCSFMPPT IHRQKRLREA  240
TAFFPGYTGA VKNECPLFEQ FQDDISDKAA QSFGLSFPIE PDPATKNSLQ FGVFPGSHNL  300
SNGNFSASEP PLEAVKLELP SLQYPETELG NWGTFSCPPP LLESVDAFIQ SPPPTSIAES  360
DSLSPRNSGL LDALLHEAKT LSSAKNHASE KSSYSATPGD IAESSTFNIC ETEWENCGEP  420
LSPMGHSATS LLSECISASG STLDEQPPAE TFTDCFSESH VKSEPADYVF TPEIQNEAPI  480
RLDSCHPDTL LASNWLEQDS GYDKDQTIMT DSIAALLGDD LSSEYKNMAA GTSISSQAWG  540
LGSCAWNNMP AVCQMSELP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32381415107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451646.10.0PREDICTED: transcription factor GAMYB-like
RefseqXP_012451647.10.0PREDICTED: transcription factor GAMYB-like
RefseqXP_012451648.10.0PREDICTED: transcription factor GAMYB-like
TrEMBLA0A0D2VD820.0A0A0D2VD82_GOSRA; Uncharacterized protein
STRINGGorai.010G212500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38022859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.31e-141myb domain protein 33
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]