PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G203800.1
Common NameB456_010G203800, LOC105772843
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 205aa    MW: 22355.6 Da    PI: 7.194
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G203800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.54.2e-42511501100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+
  Gorai.010G203800.1  51 PCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKSLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSELQ 141
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         a+la++++e
  Gorai.010G203800.1 142 AQLAKAQAE 150
                         *****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.75650151IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-4251148IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEHNEKCAQS QSCSSSPRFP SRNSQSPPPP PPPPASPSLP PAPTPTVVLS PCAACKILRR  60
RCVEKCVLAP YFPPTEPYKF TIAHRVFGAS NIIKSLQELP ESQRADAVSS MVYEASARIR  120
DPVYGCAGAI CQLQKQVSEL QAQLAKAQAE IVTMQCQQAN LLAIILEMSQ SKEANISQHQ  180
PYNMDTTCFL DDNNLGSAWE PLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-43421582118LOB family transfactor Ramosa2.1
5ly0_B3e-43421582118LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449770.11e-148PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR05e-74LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A0D2UI381e-147A0A0D2UI38_GOSRA; Uncharacterized protein
STRINGGorai.010G203800.11e-148(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.17e-65LOB domain-containing protein 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]