PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G201000.1 | ||||||||
Common Name | B456_010G201000, LOC105773596 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 721aa MW: 81302 Da PI: 5.7074 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 390.8 | 1.5e-119 | 346 | 716 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL+ cA+av+++d + a++lL+++++++sp gd mqRla+yf+ +L+arla+s+++ y+ + +++ts ++ l+a++lf ++P+ Gorai.010G201000.1 346 LRTLLTLCAQAVATDDRRSANELLKQIRQHSSPMGDGMQRLAHYFVDGLEARLAGSGTQSYNPVVTRPTS---AANILKAYHLFLAACPFR 433 5789*********************************************************999999999...999*************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 k+s++ +I++ +e++ r+HiiDf+i +G+QWp+L++ L+sRp+gpp+l+iTg++ p++g +e++eetg+rLa++Ae+++vpfef++ Gorai.010G201000.1 434 KLSNFFSDTTIMNLAENAARLHIIDFGILYGFQWPCLIRRLSSRPGGPPKLKITGIDLPQPGfrPAERVEETGRRLANYAETFKVPFEFDA 524 *************************************************************9***************************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +a++++++++e++++++gE+l+Vn++++l +llde+v +es+r++vL+l+++l P+v+++ + ++++ F +rf eal +ys+lfd+l Gorai.010G201000.1 525 -IAQKWDTIQIEDIKIESGEVLIVNCIYRLRNLLDETVVVESPRNKVLNLMRKLHPDVFILGIVNGAYSAPFFITRFREALFHYSTLFDML 614 .7***************************************************************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 e+++pre er+ +Ere++g+e++nv+acegaer+er et+++W+ r ++aGF+++pl+++++k+ak +++ + + + ++e++++l++gW Gorai.010G201000.1 615 ETNVPREIPERMLIEREIFGWEAMNVIACEGAERIERPETYKQWQVRNTRAGFRQLPLDKEMMKTAKERVNTNYHKDFVIDEDNHWLLQGW 705 **************************************************************************888************** PP GRAS 363 kdrpLvsvSaW 373 k+r +++ S+W Gorai.010G201000.1 706 KGRIVYAHSCW 716 *********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 69.26 | 320 | 697 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.2E-117 | 346 | 716 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 721 aa Download sequence Send to blast |
MDPSLQGLYS SVDRFRVNDD TLLAISSQNF NNGFKNETFA GIPPLQPATI PINLRPSASV 60 NEPEDYDFSD LVLKYISEML MEEDMEDKTC MFKESSAALQ AAEKSFYEVL GEQYPPSLEP 120 ELKYQNHESS NELHGHSCCS CSSADGNLLN LPSNYDLGMQ MSLNYSSQAN SSHSSGNSAG 180 SLVDGFTDSP VSTPRLPEIF GDSESVIQFR KGFEEASRFL PNRGNLFVDV ESDGLFLKEV 240 KEEAKSVVEK VENELLQDGS RGKKKPYPED VNLYNGRSNK QSLVYTESTV SPEMFDTVLL 300 NCQSVADLQK VLQHETNKNV QQNGQSKGPT GGKARAKKGK RNVVDLRTLL TLCAQAVATD 360 DRRSANELLK QIRQHSSPMG DGMQRLAHYF VDGLEARLAG SGTQSYNPVV TRPTSAANIL 420 KAYHLFLAAC PFRKLSNFFS DTTIMNLAEN AARLHIIDFG ILYGFQWPCL IRRLSSRPGG 480 PPKLKITGID LPQPGFRPAE RVEETGRRLA NYAETFKVPF EFDAIAQKWD TIQIEDIKIE 540 SGEVLIVNCI YRLRNLLDET VVVESPRNKV LNLMRKLHPD VFILGIVNGA YSAPFFITRF 600 REALFHYSTL FDMLETNVPR EIPERMLIER EIFGWEAMNV IACEGAERIE RPETYKQWQV 660 RNTRAGFRQL PLDKEMMKTA KERVNTNYHK DFVIDEDNHW LLQGWKGRIV YAHSCWVPVS 720 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-50 | 353 | 720 | 26 | 382 | Protein SCARECROW |
5b3h_A | 6e-50 | 353 | 720 | 25 | 381 | Protein SCARECROW |
5b3h_D | 6e-50 | 353 | 720 | 25 | 381 | Protein SCARECROW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX577484 | 0.0 | JX577484.1 Gossypium hirsutum clone NBRI_GE9321 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012451059.1 | 0.0 | PREDICTED: scarecrow-like protein 30 | ||||
Refseq | XP_012451060.1 | 0.0 | PREDICTED: scarecrow-like protein 30 | ||||
Refseq | XP_012451061.1 | 0.0 | PREDICTED: scarecrow-like protein 30 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A0D2VCU6 | 0.0 | A0A0D2VCU6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G201000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G201000.1 |
Entrez Gene | 105773596 |
Publications ? help Back to Top | |||
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