PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G196500.2 | ||||||||
Common Name | B456_010G196500, LOC105773187 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 642aa MW: 69913.9 Da PI: 5.4429 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.3 | 5.3e-08 | 249 | 269 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+r G C+ Gd C +aHg Gorai.010G196500.2 249 PCPEFRR-GACPKGDACEYAHG 269 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 9.79E-16 | 56 | 142 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.0E-16 | 56 | 162 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.388 | 58 | 157 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.4E-9 | 58 | 126 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.019 | 58 | 88 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 1.86E-15 | 60 | 156 | No hit | No description |
PROSITE profile | PS50088 | 12.048 | 93 | 128 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 7.0E-5 | 93 | 125 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 7.1E-6 | 244 | 270 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.619 | 244 | 271 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-5 | 249 | 269 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-5 | 249 | 270 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.869 | 279 | 303 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 37 | 279 | 302 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 642 aa Download sequence Send to blast |
MEGELQEPKA GSQSILLELA ASDDLVAFKS EVEEKGLDFG EASFWYGRRI GLRKMGFEER 60 APLMIAAMFG SIEILKYIIG SGKIDVNRAC GSDGVTALHC AVAGGADSSV EIVKLLLDAS 120 ADVNCVDANG NKPVDLIVPG LNSSSNHRRK VIELLLNGDD VLYGEEESDK TTMPQLPKEG 180 SEKREYPMDV SLPDINNGIY GTDDFRMYMF KVKPCSRAYS HDWTECPFVH PGENARRRDP 240 RKYPYSCVPC PEFRRGACPK GDACEYAHGV FESWLHPAQY RTRLCKDETG CARKVCFFAH 300 KPEELRPVYA STGSAMPSLR SAAMNAVDMT TLSPLALGSS SLPMPTTSTP PMSPLATSSS 360 PKTGGLWQNN FNLTPPALQL PGSRLKTTFS ARDFDLEMEL LELENQLQQQ QLMDEISSLS 420 SPSCWSKEYG RLGDLKPSNL DDAFGSLDPS LLSPLKGLSI KSGIQAQLQS PTGLQIRQNS 480 NQLRSGYPTN LTSSPVRKPS AFGYDSSAAV AAAVMNSRSS AFAKRSQSFI DRGAVTNRAG 540 LATPANPTTT MSSNTSDWSS PNGKLDWGIQ GDELNKLRKS ASFGFRNNHP AARATDMMAS 600 NMEEPDVSWV HSLVKDATPM GTATLPSWVE QMYIEQEQMV A* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.1262 | 6e-36 | flower| flowering |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48880416 | 6e-36 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012450344.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 29-like isoform X1 | ||||
Swissprot | Q9XEE6 | 0.0 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | A0A0D2RAS9 | 0.0 | A0A0D2RAS9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G196500.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G196500.2 |
Entrez Gene | 105773187 |
Publications ? help Back to Top | |||
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