PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G196500.2
Common NameB456_010G196500, LOC105773187
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 642aa    MW: 69913.9 Da    PI: 5.4429
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G196500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.3e-08249269526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f+r G C+ Gd C +aHg
  Gorai.010G196500.2 249 PCPEFRR-GACPKGDACEYAHG 269
                         8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484039.79E-1656142IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.0E-1656162IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.38858157IPR020683Ankyrin repeat-containing domain
PfamPF127962.4E-958126IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0195888IPR002110Ankyrin repeat
CDDcd002041.86E-1560156No hitNo description
PROSITE profilePS5008812.04893128IPR002110Ankyrin repeat
SMARTSM002487.0E-593125IPR002110Ankyrin repeat
SMARTSM003567.1E-6244270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619244271IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5249269IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5249270IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.869279303IPR000571Zinc finger, CCCH-type
SMARTSM0035637279302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MEGELQEPKA GSQSILLELA ASDDLVAFKS EVEEKGLDFG EASFWYGRRI GLRKMGFEER  60
APLMIAAMFG SIEILKYIIG SGKIDVNRAC GSDGVTALHC AVAGGADSSV EIVKLLLDAS  120
ADVNCVDANG NKPVDLIVPG LNSSSNHRRK VIELLLNGDD VLYGEEESDK TTMPQLPKEG  180
SEKREYPMDV SLPDINNGIY GTDDFRMYMF KVKPCSRAYS HDWTECPFVH PGENARRRDP  240
RKYPYSCVPC PEFRRGACPK GDACEYAHGV FESWLHPAQY RTRLCKDETG CARKVCFFAH  300
KPEELRPVYA STGSAMPSLR SAAMNAVDMT TLSPLALGSS SLPMPTTSTP PMSPLATSSS  360
PKTGGLWQNN FNLTPPALQL PGSRLKTTFS ARDFDLEMEL LELENQLQQQ QLMDEISSLS  420
SPSCWSKEYG RLGDLKPSNL DDAFGSLDPS LLSPLKGLSI KSGIQAQLQS PTGLQIRQNS  480
NQLRSGYPTN LTSSPVRKPS AFGYDSSAAV AAAVMNSRSS AFAKRSQSFI DRGAVTNRAG  540
LATPANPTTT MSSNTSDWSS PNGKLDWGIQ GDELNKLRKS ASFGFRNNHP AARATDMMAS  600
NMEEPDVSWV HSLVKDATPM GTATLPSWVE QMYIEQEQMV A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.12626e-36flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488804166e-36
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012450344.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like isoform X1
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A0D2RAS90.0A0A0D2RAS9_GOSRA; Uncharacterized protein
STRINGGorai.010G196500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]