PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G196500.1
Common NameB456_010G196500, LOC105773187
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 657aa    MW: 71520.7 Da    PI: 5.7275
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G196500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.4e-08264284526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f+r G C+ Gd C +aHg
  Gorai.010G196500.1 264 PCPEFRR-GACPKGDACEYAHG 284
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.1E-1671177IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.95E-1671157IPR020683Ankyrin repeat-containing domain
PfamPF127962.5E-973141IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01973103IPR002110Ankyrin repeat
PROSITE profilePS5029716.38873172IPR020683Ankyrin repeat-containing domain
CDDcd002041.94E-1575171No hitNo description
SMARTSM002487.0E-5108140IPR002110Ankyrin repeat
PROSITE profilePS5008812.048108143IPR002110Ankyrin repeat
PROSITE profilePS5010313.619259286IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-6259285IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5264284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-5264285IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.869294318IPR000571Zinc finger, CCCH-type
SMARTSM0035637294317IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MCSGSKSEHK PSSFIMEGEL QEPKAGSQSI LLELAASDDL VAFKSEVEEK GLDFGEASFW  60
YGRRIGLRKM GFEERAPLMI AAMFGSIEIL KYIIGSGKID VNRACGSDGV TALHCAVAGG  120
ADSSVEIVKL LLDASADVNC VDANGNKPVD LIVPGLNSSS NHRRKVIELL LNGDDVLYGE  180
EESDKTTMPQ LPKEGSEKRE YPMDVSLPDI NNGIYGTDDF RMYMFKVKPC SRAYSHDWTE  240
CPFVHPGENA RRRDPRKYPY SCVPCPEFRR GACPKGDACE YAHGVFESWL HPAQYRTRLC  300
KDETGCARKV CFFAHKPEEL RPVYASTGSA MPSLRSAAMN AVDMTTLSPL ALGSSSLPMP  360
TTSTPPMSPL ATSSSPKTGG LWQNNFNLTP PALQLPGSRL KTTFSARDFD LEMELLELEN  420
QLQQQQLMDE ISSLSSPSCW SKEYGRLGDL KPSNLDDAFG SLDPSLLSPL KGLSIKSGIQ  480
AQLQSPTGLQ IRQNSNQLRS GYPTNLTSSP VRKPSAFGYD SSAAVAAAVM NSRSSAFAKR  540
SQSFIDRGAV TNRAGLATPA NPTTTMSSNT SDWSSPNGKL DWGIQGDELN KLRKSASFGF  600
RNNHPAARAT DMMASNMEEP DVSWVHSLVK DATPMGTATL PSWVEQMYIE QEQMVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.12626e-36flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488804166e-36
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012450344.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like isoform X1
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A0D2RAS90.0A0A0D2RAS9_GOSRA; Uncharacterized protein
STRINGGorai.010G196500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]