PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G191900.1

Common Name

B456_010G191900, LOC105774247

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 430aa MW: 47544.3 Da PI: 5.9324

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G191900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.6	1.3e-14	224	271	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er RR ++N++++ Lr+++P++ +K++ a+i+ A++YIk+L Gorai.010G191900.1 224 TTKHFATERERRVHLNDKYQALRTMVPSP-----TKNDRASIVDDAIKYIKEL 271 579************************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.085	222	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.05E-14	222	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.10E-11	223	271	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.6E-13	225	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-12	225	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.9E-10	228	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MKVYEESGCF DPHSLTDCQE LMGLPGATPT NCHNSLEDTL TVSSYNHHHH EDASAALDME 60 PQQHYLLDNT TNSHSHLIPY LTQDLPYDQS HWERFNVVPS SSSPEAATAA AAAAGAYTPT 120 PDLLSLFHLP RCSFLPNPSI SFETTPGSPS VVYDPLFHLN LPPQPPVFRE LLQSLPHGYT 180 VPADDKDAAG VGGLYHDGDN GIIQFTRDIS MAGRAKDRDK AGKTTKHFAT ERERRVHLND 240 KYQALRTMVP SPTKNDRASI VDDAIKYIKE LLGTVRELKI LVDKKRCGQE RSKRLKTEDA 300 ASAADAGDVE CKPLGDPDQC YNTSLRSSWL QRKSKDSEVD VRIVDDEVTI KLVQRKKINC 360 LLFVSRLLDE LQLDLQHVAG GNIGDYYSFL FNTKIYEGSS VYACAIANKL IDVVDRQYAA 420 APPTSSTSL*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MKVYEESGCF DPHSLTDCQE LMGLPGATPT NCHNSLEDTL TVSSYNHHHH EDASAALDME  60
PQQHYLLDNT TNSHSHLIPY LTQDLPYDQS HWERFNVVPS SSSPEAATAA AAAAGAYTPT  120
PDLLSLFHLP RCSFLPNPSI SFETTPGSPS VVYDPLFHLN LPPQPPVFRE LLQSLPHGYT  180
VPADDKDAAG VGGLYHDGDN GIIQFTRDIS MAGRAKDRDK AGKTTKHFAT ERERRVHLND  240
KYQALRTMVP SPTKNDRASI VDDAIKYIKE LLGTVRELKI LVDKKRCGQE RSKRLKTEDA  300
ASAADAGDVE CKPLGDPDQC YNTSLRSSWL QRKSKDSEVD VRIVDDEVTI KLVQRKKINC  360
LLFVSRLLDE LQLDLQHVAG GNIGDYYSFL FNTKIYEGSS VYACAIANKL IDVVDRQYAA  420
APPTSSTSL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452120.1	0.0	PREDICTED: transcription factor bHLH91-like
TrEMBL	A0A0D2UHE6	0.0	A0A0D2UHE6_GOSRA; Uncharacterized protein
STRING	Gorai.010G191900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	1e-101	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.010G191900.1
Entrez Gene	105774247

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]