PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G177800.2
Common NameB456_010G177800, LOC105773786
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 726aa    MW: 79623.3 Da    PI: 6.0562
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G177800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.6e-2058113156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  Gorai.010G177800.2  58 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 113
                         688999***********************************************998 PP
2START221.42.9e-692474661206
                         HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
               START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                         ela +a++el+++a+++ep+Wv      + +n+de+l++f+++ +      ++ea+r+s+vv+m++++lve+l+d++ qW+  +     +a
  Gorai.010G177800.2 247 ELAVAAMEELIRMAQSGEPLWVPGDnstDVLNEDEYLRSFPRGIGpkplgLRSEASRESAVVIMNHVNLVEILMDVN-QWSSVFCgivsRA 336
                         57899*****************87777799************999********************************.******99999** PP

                         EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
               START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                         +tlev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ +++p    + +++++pSg+li++++ng+sk
  Gorai.010G177800.2 337 MTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHIDGTWAVVDVSLDNLRPNP----MSKCRRRPSGCLIQELPNGYSK 423
                         ****************************************************************9....688999**************** PP

                         EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         v+wvehv++++r +h+++r++v+sgla+gak+wvatl+rqce+
  Gorai.010G177800.2 424 VIWVEHVEVDDRAVHNIYRPVVNSGLAFGAKRWVATLDRQCER 466
                         *****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-2242109IPR009057Homeodomain-like
SuperFamilySSF466895.43E-1945115IPR009057Homeodomain-like
PROSITE profilePS5007116.64955115IPR001356Homeobox domain
SMARTSM003893.2E-1956119IPR001356Homeobox domain
CDDcd000862.06E-1858116No hitNo description
PfamPF000469.8E-1858113IPR001356Homeobox domain
PROSITE profilePS5084844.574238469IPR002913START domain
SuperFamilySSF559611.45E-36238468No hitNo description
CDDcd088759.34E-129242465No hitNo description
SMARTSM002345.0E-71247466IPR002913START domain
PfamPF018521.9E-58248466IPR002913START domain
Gene3DG3DSA:3.30.530.202.2E-5344466IPR023393START-like domain
SuperFamilySSF559611.1E-26486717No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MFSPNLFESP HMFDMSHKTS ESELMGKIRD DDYEIKSVNE TMDAPSGDDQ DPDQRPKKKR  60
YHRHTQHQIQ EMEAFFKECP HPDDKQRKEL GRELGLEPLQ VKFWFQNKRT QMKAQHERHE  120
NAILKAENEK LRAENNRYKE ALSNATCPSC GGPAALGEMS FDEQHLRIEN ARLREEIDRI  180
SGIAAKYVGK PLSSLPHLSS HLHSRSVDLG ASNFGNQSGF VGEMDRSGDL LRSVSGPTEA  240
DKPMIVELAV AAMEELIRMA QSGEPLWVPG DNSTDVLNED EYLRSFPRGI GPKPLGLRSE  300
ASRESAVVIM NHVNLVEILM DVNQWSSVFC GIVSRAMTLE VLSTGVAGNY NGALQVMTAE  360
FQVPSPLVPT RENYFVRYCK QHIDGTWAVV DVSLDNLRPN PMSKCRRRPS GCLIQELPNG  420
YSKVIWVEHV EVDDRAVHNI YRPVVNSGLA FGAKRWVATL DRQCERLASS MASNIPAGDL  480
CVITSPEGRK SMLKLAERMV TSFCTGVGAS TAHAWTTLSA TGSDDVRVMT RKSMDDPGRP  540
PGIVLSAATS FWIQVPPKRV FDFLRDENSR SEWDILSNGG LVQEMAHIAN GRDPGNCVSL  600
LRVNSANSSQ SNMLILQESC TDATGSYVIY APVDIVAMNV VLSGGDPDYV ALLPSGFAIL  660
PDGPGVNGGG ILEIGSGGSL LTVAFQILVD SVPTAKLSLG SVATVNSLIK CTVERIKAAV  720
KCNNA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the layer 1 (L1) of shoot meristems. {ECO:0000269|PubMed:12505995}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5859520.0JN585952.1 Gossypium hirsutum HD-1D gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451363.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_012451364.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_012451365.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A0D2VBR60.0A0A0D2VBR6_GOSRA; Uncharacterized protein
STRINGGorai.010G177800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]