PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G177800.1 | ||||||||
Common Name | B456_010G177800, LOC105773786 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 726aa MW: 79623.3 Da PI: 6.0562 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.9 | 4.6e-20 | 58 | 113 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+ qVk+WFqN+R+++k Gorai.010G177800.1 58 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 113 688999***********************************************998 PP | |||||||
2 | START | 221.4 | 2.9e-69 | 247 | 466 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 ela +a++el+++a+++ep+Wv + +n+de+l++f+++ + ++ea+r+s+vv+m++++lve+l+d++ qW+ + +a Gorai.010G177800.1 247 ELAVAAMEELIRMAQSGEPLWVPGDnstDVLNEDEYLRSFPRGIGpkplgLRSEASRESAVVIMNHVNLVEILMDVN-QWSSVFCgivsRA 336 57899*****************87777799************999********************************.******99999** PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 +tlev+s+g galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ +++p + +++++pSg+li++++ng+sk Gorai.010G177800.1 337 MTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHIDGTWAVVDVSLDNLRPNP----MSKCRRRPSGCLIQELPNGYSK 423 ****************************************************************9....688999**************** PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 v+wvehv++++r +h+++r++v+sgla+gak+wvatl+rqce+ Gorai.010G177800.1 424 VIWVEHVEVDDRAVHNIYRPVVNSGLAFGAKRWVATLDRQCER 466 *****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-22 | 42 | 109 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.43E-19 | 45 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.649 | 55 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-19 | 56 | 119 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.06E-18 | 58 | 116 | No hit | No description |
Pfam | PF00046 | 9.8E-18 | 58 | 113 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 44.574 | 238 | 469 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.45E-36 | 238 | 468 | No hit | No description |
CDD | cd08875 | 9.34E-129 | 242 | 465 | No hit | No description |
SMART | SM00234 | 5.0E-71 | 247 | 466 | IPR002913 | START domain |
Pfam | PF01852 | 1.9E-58 | 248 | 466 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.2E-5 | 344 | 466 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.1E-26 | 486 | 717 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence Send to blast |
MFSPNLFESP HMFDMSHKTS ESELMGKIRD DDYEIKSVNE TMDAPSGDDQ DPDQRPKKKR 60 YHRHTQHQIQ EMEAFFKECP HPDDKQRKEL GRELGLEPLQ VKFWFQNKRT QMKAQHERHE 120 NAILKAENEK LRAENNRYKE ALSNATCPSC GGPAALGEMS FDEQHLRIEN ARLREEIDRI 180 SGIAAKYVGK PLSSLPHLSS HLHSRSVDLG ASNFGNQSGF VGEMDRSGDL LRSVSGPTEA 240 DKPMIVELAV AAMEELIRMA QSGEPLWVPG DNSTDVLNED EYLRSFPRGI GPKPLGLRSE 300 ASRESAVVIM NHVNLVEILM DVNQWSSVFC GIVSRAMTLE VLSTGVAGNY NGALQVMTAE 360 FQVPSPLVPT RENYFVRYCK QHIDGTWAVV DVSLDNLRPN PMSKCRRRPS GCLIQELPNG 420 YSKVIWVEHV EVDDRAVHNI YRPVVNSGLA FGAKRWVATL DRQCERLASS MASNIPAGDL 480 CVITSPEGRK SMLKLAERMV TSFCTGVGAS TAHAWTTLSA TGSDDVRVMT RKSMDDPGRP 540 PGIVLSAATS FWIQVPPKRV FDFLRDENSR SEWDILSNGG LVQEMAHIAN GRDPGNCVSL 600 LRVNSANSSQ SNMLILQESC TDATGSYVIY APVDIVAMNV VLSGGDPDYV ALLPSGFAIL 660 PDGPGVNGGG ILEIGSGGSL LTVAFQILVD SVPTAKLSLG SVATVNSLIK CTVERIKAAV 720 KCNNA* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in the layer 1 (L1) of shoot meristems. {ECO:0000269|PubMed:12505995}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN585952 | 0.0 | JN585952.1 Gossypium hirsutum HD-1D gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012451363.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
Refseq | XP_012451364.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
Refseq | XP_012451365.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | A0A0D2VBR6 | 0.0 | A0A0D2VBR6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G177800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G177800.1 |
Entrez Gene | 105773786 |
Publications ? help Back to Top | |||
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