PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G171100.1
Common NameB456_010G171100, LOC105771504
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 306aa    MW: 35269 Da    PI: 8.7769
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G171100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.24.1e-50291601128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         l pGfrFhPtdeelv +yL++kve+k +++ ++ik+vdiyk++PwdLpk  k+++ +ekewyfF++r +ky+++ r+nr+t sg+Wkatg 
  Gorai.010G171100.1  29 LLPGFRFHPTDEELVGFYLRRKVEKKLFSI-DIIKHVDIYKHDPWDLPKvsKLSSgTEKEWYFFCRRGRKYRNSIRPNRVTGSGFWKATGI 118
                         579***************************.99***************54544333677******************************** PP

                 NAM  89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         dk+++s    +  +glkk+Lv+ykg+a kg+ktdW+mhe+rl
  Gorai.010G171100.1 119 DKPIYSVggFHDCIGLKKSLVYYKGSAGKGTKTDWMMHEFRL 160
                         ******9443455***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.15E-5422190IPR003441NAC domain
PROSITE profilePS5100553.53529190IPR003441NAC domain
PfamPF023657.8E-2631160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MYIKVVKEIV RSIEMEVLEK MISEDEDVLL PGFRFHPTDE ELVGFYLRRK VEKKLFSIDI  60
IKHVDIYKHD PWDLPKVSKL SSGTEKEWYF FCRRGRKYRN SIRPNRVTGS GFWKATGIDK  120
PIYSVGGFHD CIGLKKSLVY YKGSAGKGTK TDWMMHEFRL PPPTTTTLSS TNKDNLPEAE  180
VWTLCRIFKR DVSSRKFASD WQNKKNKQNT NTSATSSRAC SVESENSLKV ENFGVLDDKG  240
IERKLQNDHF LGGNQLFAAT TQVLPSYLSF SNPNAADEYF GQEHWDELRP EVDYTIAKSL  300
LYSDW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-482919617171NO APICAL MERISTEM PROTEIN
1ut4_B2e-482919617171NO APICAL MERISTEM PROTEIN
1ut7_A2e-482919617171NO APICAL MERISTEM PROTEIN
1ut7_B2e-482919617171NO APICAL MERISTEM PROTEIN
3swm_A2e-482919620174NAC domain-containing protein 19
3swm_B2e-482919620174NAC domain-containing protein 19
3swm_C2e-482919620174NAC domain-containing protein 19
3swm_D2e-482919620174NAC domain-containing protein 19
3swp_A2e-482919620174NAC domain-containing protein 19
3swp_B2e-482919620174NAC domain-containing protein 19
3swp_C2e-482919620174NAC domain-containing protein 19
3swp_D2e-482919620174NAC domain-containing protein 19
4dul_A2e-482919617171NAC domain-containing protein 19
4dul_B2e-482919617171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472100.0KC847210.1 Gossypium hirsutum NAC domain protein NAC33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448413.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1
SwissprotQ9SK552e-85NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0D2UGA90.0A0A0D2UGA9_GOSRA; Uncharacterized protein
STRINGGorai.010G171100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.15e-85NAC family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  3. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  4. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  5. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  6. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]