PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G165500.1

Common Name

B456_010G165500, LOC105773095

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 184aa MW: 20764.5 Da PI: 11.3252

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G165500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.5	1.3e-21	10	57	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++++ rqvtfskRr g++KKA+EL +LC+a+va+++fs+ gk y + Gorai.010G165500.1 10 MVKDSGSRQVTFSKRRSGLFKKANELATLCAAQVAIVVFSPGGKPYSF 57 5788999************************************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.3E-33	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.492	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.98E-31	2	73	No hit	No description
SuperFamily	SSF55455	2.35E-28	2	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-20	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.2E-24	12	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-20	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-20	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MGRRKIEMKM VKDSGSRQVT FSKRRSGLFK KANELATLCA AQVAIVVFSP GGKPYSFGHP 60 SVEAVAERFL TLNLRSRVSI PRQLVAQPQR EAKVERLSRR LNAILNKLQA EMKRGEMLDE 120 AVKAACKRSK FRKPINEINL YELIEMRKAM GQLRERVKQR MSEIEASSSL LLLSKMATKQ 180 AES*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM236451	0.0	HM236451.1 Gossypium hirsutum MADS35 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012450206.1	1e-129	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A0D2UFW9	1e-128	A0A0D2UFW9_GOSRA; Uncharacterized protein
STRING	Gorai.010G165500.1	1e-129	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	9e-42	AGAMOUS-like 29

Link Out ? help Back to Top
Phytozome	Gorai.010G165500.1
Entrez Gene	105773095

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]