PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G164700.1
Common NameB456_010G164700, LOC105773124
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 277aa    MW: 31486.6 Da    PI: 9.1819
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G164700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.47.1e-34136193259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+H+h+
  Gorai.010G164700.1 136 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCRVKKRVERSFQDPSMVITTYEGQHKHP 193
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-35120195IPR003657WRKY domain
SuperFamilySSF1182907.32E-30127195IPR003657WRKY domain
PROSITE profilePS5081132.776130195IPR003657WRKY domain
SMARTSM007742.6E-39135194IPR003657WRKY domain
PfamPF031062.3E-26136193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MWDHEFRNFH CPTDHTCSRV SLSAADPCSF MRLNCTDSLQ SPIGYGRSLE KALAFSHSSS  60
SQPPFSSVGA TPNSCISYSS TQDGSDKSNK DCQLKELEDW SESSKKGNKL ANKKGEKKHK  120
ETRFAFMTKS EVDLLEDGYR WRKYGQKAVK NSPYPRSYYR CTTQKCRVKK RVERSFQDPS  180
MVITTYEGQH KHPLPTTVKR PMLFPSFMLG PSPPPPRRRH ELFTRMPGDM NNYQVAAGAD  240
SLMFAENFSP FLQVPDNGLL QDMVPSAFLK HEPYEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-30125195777Probable WRKY transcription factor 4
2lex_A6e-30125195777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310890.0KF031089.1 Gossypium hirsutum WRKY transcription factor 44 (WRKY44) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012450251.10.0PREDICTED: probable WRKY transcription factor 71 isoform X1
SwissprotQ93WV43e-54WRK71_ARATH; WRKY transcription factor 71
TrEMBLA0A0D2SU470.0A0A0D2SU47_GOSRA; Uncharacterized protein
STRINGGorai.010G164700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15242693
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-54WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Yu Y, et al.
    WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana.
    Plant J., 2016. 85(1): p. 96-106
    [PMID:26643131]
  4. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  5. Yu Y, et al.
    WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(2): p. 414-422
    [PMID:29272465]