PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G159700.1
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 291aa    MW: 33201.1 Da    PI: 8.0726
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G159700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.62.2e-3197150255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         prlrWtp+LH +Fv+ ve+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+
  Gorai.010G159700.1  97 PRLRWTPDLHLSFVHSVERLGGQDRATPKLVLQLMNVKGLSIAHVKSHLQMYRS 150
                         8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.08493153IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2993152IPR009057Homeodomain-like
SuperFamilySSF466891.18E-1496153IPR009057Homeodomain-like
TIGRFAMsTIGR015577.4E-2297152IPR006447Myb domain, plants
PfamPF002492.2E-798149IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MIEGMVEKHD EEKRVDNEQA ENISAMSFPS QKCSSLDLNE EASSKEDYDY NIIGNGKQGD  60
EIEKTSEGNS SNNNNNIVGE KGNGRRRVRQ YVRSKLPRLR WTPDLHLSFV HSVERLGGQD  120
RATPKLVLQL MNVKGLSIAH VKSHLQMYRS KKRDEAGQVL CERTRAIKGR EELQSSPHLH  180
FRMENGGFVL ATESPLYQPP LDFEVSFPRH QVSNDVGHHT NQIHGVDARL GPMRTGRLLE  240
DKRWHPFERQ KHRDCLPDLQ LRRSRRSGID AETTTHCEVP QEISTHLSLS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-1798152357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-1798152357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-1798152357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-1798152357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5964072e-37JX596407.1 Gossypium hirsutum clone NBRI_GE32984 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452890.10.0PREDICTED: protein PHR1-LIKE 1-like
TrEMBLA0A1U8IUK80.0A0A1U8IUK8_GOSHI; protein PHR1-LIKE 1-like isoform X1
STRINGGorai.010G159700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.15e-37G2-like family protein