PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G157600.2
Common NameB456_010G157600, LOC105774591
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 307aa    MW: 34192.3 Da    PI: 8.9182
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G157600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.33.7e-33571981128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                         lp+G++F+Ptd+e++ e+L++kv  +k      +   +    +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++ 
  Gorai.010G157600.2  57 LPAGVKFDPTDQEIL-EHLEAKVILDKcnlhplI---DefipTLEGEnGICYTHPERLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHt 142
                         799***********9.99****998884554332...132222333336**********.555666777******************8443 PP

                 NAM  80 ......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               + +W++tgk+++vl+ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Gorai.010G157600.2 143 gdedgsETRWHKTGKTRPVLV-GGTVKGYKKILVLYtnYGRQKKPEKTNWVMHQYHL 198
                         455444678************.99************6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-3951217IPR003441NAC domain
PROSITE profilePS5100534.05457217IPR003441NAC domain
PfamPF023655.0E-1558198IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MTWCNNTVDG RALHIATKEP TVTVATSAAA ASTISCPSCG HNIPYQDQAG IHDLPGLPAG  60
VKFDPTDQEI LEHLEAKVIL DKCNLHPLID EFIPTLEGEN GICYTHPERL PGVSKDGQIR  120
HFFHRPSKAY TTGTRKRRKV HTGDEDGSET RWHKTGKTRP VLVGGTVKGY KKILVLYTNY  180
GRQKKPEKTN WVMHQYHLGN NEDEKDGELV VSKVFYQTQP RQCGTSSSIK ETLNRKSKNI  240
IQTPNSSSGG VVEYYNQPFV SFDHGHGSHH YRENPPQIIP NFGVQGDESS FYRLASDTRK  300
GKGRSL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472330.0KC847233.1 Gossypium hirsutum NAC domain protein NAC56 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313842.10.0NAC domain-containing protein 73-like
RefseqXP_012452585.10.0PREDICTED: NAC domain-containing protein 73-like
RefseqXP_012452586.10.0PREDICTED: NAC domain-containing protein 73-like
RefseqXP_016683550.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-121NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0D2STN80.0A0A0D2STN8_GOSRA; Uncharacterized protein
TrEMBLW6JF060.0W6JF06_GOSHI; NAC domain protein NAC56
STRINGGorai.010G157600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-121NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]