PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G155200.1

Common Name

B456_010G155200, LOC105774686

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 296aa MW: 32665.9 Da PI: 8.8305

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G155200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	1e-39	35	94	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWtkGG+lrnvPvGgg+rknk+ Gorai.010G155200.1 35 QAQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTKGGTLRNVPVGGGCRKNKRL 94 57899*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	34	93	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-34	37	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.516	39	93	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MVITSTTNEW PKNRVDEKHM MMASTSKLME KPSQQAQALK CPRCDSSNTK FCYYNNYSLS 60 QPRHFCKACK RYWTKGGTLR NVPVGGGCRK NKRLKRPASA IAGATASPSP RPQIDVSSPS 120 TPPININPLF YGLATDTNLP FPNCFDSRVS SGVETVTNYD LQPPQLNAFR PGFSSATAIV 180 SSDYGNGKQI QDVITSNPLL STYSNIFTIA TPTIASLLAS TLHQHKFIDG GLENTQPPTH 240 FQALPPFRDL HMTDDIGAAI KDVKVEEPQR RMEWNVVQAQ LEQIGSYDPV TAWHD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452697.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A0D2R8G2	0.0	A0A0D2R8G2_GOSRA; Uncharacterized protein
STRING	Gorai.010G155200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4709	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	5e-40	Dof family protein

Link Out ? help Back to Top
Phytozome	Gorai.010G155200.1
Entrez Gene	105774686

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]