PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G152100.1

Common Name

B456_010G152100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 278aa MW: 31249.8 Da PI: 8.5505

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G152100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	112.9	1.4e-35	50	108	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 lkcprCds+ntkfCyynny+ sqPryfCk+C+r+WtkGG lrnvPvGggr+++++++ Gorai.010G152100.1 50 PPLKCPRCDSSNTKFCYYNNYNKSQPRYFCKTCKRHWTKGGNLRNVPVGGGRKNKRHQT 108 6789***********************************************88888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.7E-31	51	105	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.251	52	106	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-21	52	105	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	54	90	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MGLSCKQVSS DEVEWIQGQS LLQAPTMERP KASSMKRRHH QENQLQQLEP PLKCPRCDSS 60 NTKFCYYNNY NKSQPRYFCK TCKRHWTKGG NLRNVPVGGG RKNKRHQTSA AASASKTTTT 120 TIKSSTSSAI QPHQLPPADQ KYIPNIKFHS PLQQNSVNCR NSEREIFSTN NGVCLDSTMS 180 QGLQTLFPLP FPFSSSSSYS LETFPSSISA SFQSSSLYNY SGETREDPTG SLTWKEPITS 240 NGIEMANYWN WDDIDALVST DLNIPWDDSE IKPWKDL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393788	4e-36	GQ393788.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0753 SSR marker CGR5843 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012451447.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A0D2STD6	0.0	A0A0D2STD6_GOSRA; Uncharacterized protein
STRING	Gorai.010G152100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	4e-28	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Gorai.010G152100.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]