PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G117500.1
Common NameB456_010G117500, LOC105771597
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 176aa    MW: 19716.6 Da    PI: 9.7328
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G117500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37.1e-17755254
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                        +y+GVr+++ +g+Wv+eIr+p        +r++lg+f ta +Aa+a+++a++ + 
  Gorai.010G117500.1  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAGDAARAYDEAARLMC 55
                        69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.06E-32666No hitNo description
PfamPF008476.6E-10756IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-32764IPR001471AP2/ERF domain
SMARTSM003802.8E-37770IPR001471AP2/ERF domain
PROSITE profilePS5103219.941764IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-19765IPR016177DNA-binding domain
PRINTSPR003672.9E-10819IPR001471AP2/ERF domain
PRINTSPR003672.9E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA GDAARAYDEA ARLMCGPRAR  60
TNFAYNPNAP QSSSSSSSSK LLSETLRAKL HKCYMASLQI MKQQKVDEPR NKAPAPRVIG  120
NHGIAGMGVG PLPVQEMEAT RVVKKPQVLE PLEEDHVEQM IEELLHYGSI ELCNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-15871670ATERF1
3gcc_A6e-15871670ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448482.11e-129PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW52e-71ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0D2R6D81e-128A0A0D2R6D8_GOSRA; Uncharacterized protein
STRINGGorai.010G117500.11e-129(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.14e-61ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]