PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G117100.1
Common NameB456_010G117100, LOC105774070
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 435aa    MW: 48085.5 Da    PI: 6.3267
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G117100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073784112154
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         k +yp++e++++L +++gL+ +q+ +WF N+R +
  Gorai.010G117100.1 378 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 411
                         569*****************************87 PP
2ELK28.82.8e-10332353122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELKh+L+++Y+++++++++E++
  Gorai.010G117100.1 332 ELKHELKQGYKEKIVDIREEIL 353
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.0E-20164208IPR005540KNOX1
PfamPF037901.7E-17166207IPR005540KNOX1
SMARTSM012568.8E-29220275IPR005541KNOX2
PfamPF037911.1E-20225274IPR005541KNOX2
PROSITE profilePS512139.969332352IPR005539ELK domain
PfamPF037891.0E-6332353IPR005539ELK domain
SMARTSM011886.1E-4332353IPR005539ELK domain
PROSITE profilePS5007111.612352415IPR001356Homeobox domain
SuperFamilySSF466897.27E-16354417IPR009057Homeodomain-like
SMARTSM003891.1E-10354419IPR001356Homeobox domain
CDDcd000861.10E-11355416No hitNo description
Gene3DG3DSA:1.10.10.606.2E-25359416IPR009057Homeodomain-like
PfamPF059205.2E-18372411IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MSFHHNHLSS QDLPLHPHFA DHHHHQRQPA QFPETGGPNW LNAALLRSEQ TQPPPQPHGD  60
HFSDHPSFLN LHIAETVSDS TAAAHQAPNR WLSRSSSSLL QRNHSDVIQD VAATAAAAAG  120
GGGGDSMVAV ESGELKNSNS ETMNKSEGVV VQSGGDAAVN WQNARCKAEI LAHPLYEQLL  180
SAHVSCLRIA TPVDQLPRID AQLDQSQHVV AKYSALGGAA QGLVADDKEL DQFMTQYVVL  240
LCSFKEQLQQ HVRVHAMEAV MACWEIEQSL QSLTGVSPGE GTGATMSDDD EDQVESDANM  300
FDASFDGPDS MGFGPLIPTE TERSLMERVR RELKHELKQG YKEKIVDIRE EILRKRRAGK  360
LPGDTTSVLK AWWQAHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK RNWHTNPSTS  420
TALKTKRKSI AGEN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.24520.0flower|seedling| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451856.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0D2SRA60.0A0A0D2SRA6_GOSRA; Uncharacterized protein
STRINGGorai.010G117100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]