PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G110000.2
Common NameB456_010G110000, LOC105773388
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 980aa    MW: 108170 Da    PI: 5.2629
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G110000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.7e-183985148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEd++l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Gorai.010G110000.2 39 KGQWTAEEDDILSKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 85
                        799****************************9.************986 PP
2Myb_DNA-binding66.35.6e-2191137148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+W++eEdel++++v+++G++ W+tIa++++ gR +kqc++rw+++l
  Gorai.010G110000.2  91 KGPWSKEEDELIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 137
                         79******************************.*************97 PP
3Myb_DNA-binding48.52e-15143185145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         r +WT+eE++ lv+a++ +G++ W+   + ++ gRt++ +k++w+
  Gorai.010G110000.2 143 REAWTQEEELALVRAHQIFGNR-WAELTKFLP-GRTDNAIKNHWN 185
                         789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7033485IPR017930Myb domain
SuperFamilySSF466892.3E-153592IPR009057Homeodomain-like
SMARTSM007171.2E-143887IPR001005SANT/Myb domain
PfamPF002492.4E-153985IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-214092IPR009057Homeodomain-like
CDDcd001673.59E-134285No hitNo description
PROSITE profilePS5129434.00586141IPR017930Myb domain
SuperFamilySSF466891.87E-3188184IPR009057Homeodomain-like
SMARTSM007174.5E-2090139IPR001005SANT/Myb domain
PfamPF002491.4E-1991137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-2893139IPR009057Homeodomain-like
CDDcd001671.18E-1793137No hitNo description
Gene3DG3DSA:1.10.10.604.9E-21140192IPR009057Homeodomain-like
SMARTSM007171.2E-14142190IPR001005SANT/Myb domain
PROSITE profilePS5129418.759142192IPR017930Myb domain
PfamPF002494.3E-13143186IPR001005SANT/Myb domain
CDDcd001672.38E-11145185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 980 aa     Download sequence    Send to blast
MESDIKVSTP SVGLGSSDGA QRIRPVHGRT SGPTRRSTKG QWTAEEDDIL SKAVQRFKGK  60
NWKKIAECFK DRTDVQCLHR WQKVLNPELV KGPWSKEEDE LIIELVNKYG PKKWSTIAQH  120
LPGRIGKQCR ERWHNHLNPS INREAWTQEE ELALVRAHQI FGNRWAELTK FLPGRTDNAI  180
KNHWNSSVKK KLDSYIASGL LEQLQFPVLA NQSQPMPSSS LRMQSTVDDS GAKCRKESED  240
ISECSQESNM IGCSQSASDL ATAAVHTKEQ FHLTEMPGVS KERNSSSAPC SEEYYPSFED  300
VNFSIPEIPC EVGYSSSGDY QFGEHMLITD DECCRVLFSE AVNDGCFASE NFTQGSNIVE  360
LGGCTNTSLC QPSDIQPSET GKTPASQSGL PSRSEVLPTS CCQSFASPSL LSVEDGTLMY  420
GQEQSQLNCQ PFGTQEQEFT MNAHDGFIFT NDDHTNDTDL QEQTYLAKDS QKLVSVNSIG  480
SELSAMLTCP IADDKRNLPV EQDVRGLCYE PPRFPSLDVP FFSCDLVPSG GNMQQEYSPL  540
GIRQLMMSSM NCISPFRLWD SPSRDGSPDA VLKSAAKTFT GTPSILKKRH RDLLSPLSER  600
RREKKLEIDM TSSLTKDFSR LDVMFDESVT GNTSQVSPSK RKTNARASIE EKENVCQEFH  660
GSLDNGGDHT EPLDDEAQKK DSNGTNSPGN IKKEAWGIDI KDKTDAHASE KIIQQPSAVL  720
IEHNVNDLLL FSPDRVGLKA DQPLLPSSIR TPRNQCHKSF RAISNQGLSG NACLIVSSPT  780
LKVKNSDGHS ISVTAVQCTN SPATLENLAD NAGIDTAIEN YNIFGGTPFR RSIESPSAWK  840
SPWFINSFIP GPRIDTEITI EDMGYVMSPA ERSYDAIGLI KQLSEHTAAA YADALEVLGN  900
ETPKSIVKGR LSNNRNMDKE NNGVENSSHL TSNILAERRI LDFSECETPR KETENGKSST  960
TAATVSFSGP SSYLLKGCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-69391926159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-69391926159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1598605ERRREKKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5825941e-35JX582594.1 Gossypium hirsutum clone NBRI_GE15451 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012450680.10.0PREDICTED: uncharacterized protein LOC105773388
RefseqXP_012450681.10.0PREDICTED: uncharacterized protein LOC105773388
RefseqXP_012450682.10.0PREDICTED: uncharacterized protein LOC105773388
TrEMBLA0A0D2SQU60.0A0A0D2SQU6_GOSRA; Uncharacterized protein
STRINGGorai.010G110000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.10.0myb domain protein 3r-4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]