PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G110000.1 | ||||||||
Common Name | B456_010G110000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 981aa MW: 108298 Da PI: 5.2629 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.8e-18 | 39 | 85 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l Gorai.010G110000.1 39 KGQWTAEEDDILSKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 85 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 56.3 | 7.2e-18 | 91 | 138 | 1 | 48 |
TSSS-HH.HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTte.EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++e Edel++++v+++G++ W+tIa++++ gR +kqc++rw+++l Gorai.010G110000.1 91 KGPWSKEqEDELIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 138 6899976599***********************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.5 | 2e-15 | 144 | 186 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +WT+eE++ lv+a++ +G++ W+ + ++ gRt++ +k++w+ Gorai.010G110000.1 144 REAWTQEEELALVRAHQIFGNR-WAELTKFLP-GRTDNAIKNHWN 186 789*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.703 | 34 | 85 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.45E-17 | 37 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 38 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 39 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-19 | 40 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.59E-13 | 42 | 85 | No hit | No description |
PROSITE profile | PS51294 | 30.943 | 86 | 142 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.39E-28 | 88 | 185 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-16 | 90 | 140 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-25 | 91 | 141 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-16 | 91 | 138 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.83E-16 | 93 | 138 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-20 | 142 | 193 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.759 | 143 | 193 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-14 | 143 | 191 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-13 | 144 | 187 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.38E-11 | 146 | 186 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 981 aa Download sequence Send to blast |
MESDIKVSTP SVGLGSSDGA QRIRPVHGRT SGPTRRSTKG QWTAEEDDIL SKAVQRFKGK 60 NWKKIAECFK DRTDVQCLHR WQKVLNPELV KGPWSKEQED ELIIELVNKY GPKKWSTIAQ 120 HLPGRIGKQC RERWHNHLNP SINREAWTQE EELALVRAHQ IFGNRWAELT KFLPGRTDNA 180 IKNHWNSSVK KKLDSYIASG LLEQLQFPVL ANQSQPMPSS SLRMQSTVDD SGAKCRKESE 240 DISECSQESN MIGCSQSASD LATAAVHTKE QFHLTEMPGV SKERNSSSAP CSEEYYPSFE 300 DVNFSIPEIP CEVGYSSSGD YQFGEHMLIT DDECCRVLFS EAVNDGCFAS ENFTQGSNIV 360 ELGGCTNTSL CQPSDIQPSE TGKTPASQSG LPSRSEVLPT SCCQSFASPS LLSVEDGTLM 420 YGQEQSQLNC QPFGTQEQEF TMNAHDGFIF TNDDHTNDTD LQEQTYLAKD SQKLVSVNSI 480 GSELSAMLTC PIADDKRNLP VEQDVRGLCY EPPRFPSLDV PFFSCDLVPS GGNMQQEYSP 540 LGIRQLMMSS MNCISPFRLW DSPSRDGSPD AVLKSAAKTF TGTPSILKKR HRDLLSPLSE 600 RRREKKLEID MTSSLTKDFS RLDVMFDESV TGNTSQVSPS KRKTNARASI EEKENVCQEF 660 HGSLDNGGDH TEPLDDEAQK KDSNGTNSPG NIKKEAWGID IKDKTDAHAS EKIIQQPSAV 720 LIEHNVNDLL LFSPDRVGLK ADQPLLPSSI RTPRNQCHKS FRAISNQGLS GNACLIVSSP 780 TLKVKNSDGH SISVTAVQCT NSPATLENLA DNAGIDTAIE NYNIFGGTPF RRSIESPSAW 840 KSPWFINSFI PGPRIDTEIT IEDMGYVMSP AERSYDAIGL IKQLSEHTAA AYADALEVLG 900 NETPKSIVKG RLSNNRNMDK ENNGVENSSH LTSNILAERR ILDFSECETP RKETENGKSS 960 TTAATVSFSG PSSYLLKGCR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 9e-68 | 39 | 193 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-68 | 39 | 193 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 599 | 606 | ERRREKKL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX582594 | 3e-36 | JX582594.1 Gossypium hirsutum clone NBRI_GE15451 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012450680.1 | 0.0 | PREDICTED: uncharacterized protein LOC105773388 | ||||
Refseq | XP_012450681.1 | 0.0 | PREDICTED: uncharacterized protein LOC105773388 | ||||
Refseq | XP_012450682.1 | 0.0 | PREDICTED: uncharacterized protein LOC105773388 | ||||
TrEMBL | A0A0D2UA19 | 0.0 | A0A0D2UA19_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G110000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4674 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 0.0 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G110000.1 |
Publications ? help Back to Top | |||
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