PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G110000.1
Common NameB456_010G110000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 981aa    MW: 108298 Da    PI: 5.2629
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G110000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.8e-183985148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEd++l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Gorai.010G110000.1 39 KGQWTAEEDDILSKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 85
                        799****************************9.************986 PP
2Myb_DNA-binding56.37.2e-1891138148
                         TSSS-HH.HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTte.EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+W++e Edel++++v+++G++ W+tIa++++ gR +kqc++rw+++l
  Gorai.010G110000.1  91 KGPWSKEqEDELIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 138
                         6899976599***********************.*************97 PP
3Myb_DNA-binding48.52e-15144186145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         r +WT+eE++ lv+a++ +G++ W+   + ++ gRt++ +k++w+
  Gorai.010G110000.1 144 REAWTQEEELALVRAHQIFGNR-WAELTKFLP-GRTDNAIKNHWN 186
                         789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7033485IPR017930Myb domain
SuperFamilySSF466894.45E-173799IPR009057Homeodomain-like
SMARTSM007171.2E-143887IPR001005SANT/Myb domain
PfamPF002492.4E-153985IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-194090IPR009057Homeodomain-like
CDDcd001673.59E-134285No hitNo description
PROSITE profilePS5129430.94386142IPR017930Myb domain
SuperFamilySSF466891.39E-2888185IPR009057Homeodomain-like
SMARTSM007174.3E-1690140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2591141IPR009057Homeodomain-like
PfamPF002491.7E-1691138IPR001005SANT/Myb domain
CDDcd001674.83E-1693138No hitNo description
Gene3DG3DSA:1.10.10.602.2E-20142193IPR009057Homeodomain-like
PROSITE profilePS5129418.759143193IPR017930Myb domain
SMARTSM007171.2E-14143191IPR001005SANT/Myb domain
PfamPF002494.3E-13144187IPR001005SANT/Myb domain
CDDcd001672.38E-11146186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 981 aa     Download sequence    Send to blast
MESDIKVSTP SVGLGSSDGA QRIRPVHGRT SGPTRRSTKG QWTAEEDDIL SKAVQRFKGK  60
NWKKIAECFK DRTDVQCLHR WQKVLNPELV KGPWSKEQED ELIIELVNKY GPKKWSTIAQ  120
HLPGRIGKQC RERWHNHLNP SINREAWTQE EELALVRAHQ IFGNRWAELT KFLPGRTDNA  180
IKNHWNSSVK KKLDSYIASG LLEQLQFPVL ANQSQPMPSS SLRMQSTVDD SGAKCRKESE  240
DISECSQESN MIGCSQSASD LATAAVHTKE QFHLTEMPGV SKERNSSSAP CSEEYYPSFE  300
DVNFSIPEIP CEVGYSSSGD YQFGEHMLIT DDECCRVLFS EAVNDGCFAS ENFTQGSNIV  360
ELGGCTNTSL CQPSDIQPSE TGKTPASQSG LPSRSEVLPT SCCQSFASPS LLSVEDGTLM  420
YGQEQSQLNC QPFGTQEQEF TMNAHDGFIF TNDDHTNDTD LQEQTYLAKD SQKLVSVNSI  480
GSELSAMLTC PIADDKRNLP VEQDVRGLCY EPPRFPSLDV PFFSCDLVPS GGNMQQEYSP  540
LGIRQLMMSS MNCISPFRLW DSPSRDGSPD AVLKSAAKTF TGTPSILKKR HRDLLSPLSE  600
RRREKKLEID MTSSLTKDFS RLDVMFDESV TGNTSQVSPS KRKTNARASI EEKENVCQEF  660
HGSLDNGGDH TEPLDDEAQK KDSNGTNSPG NIKKEAWGID IKDKTDAHAS EKIIQQPSAV  720
LIEHNVNDLL LFSPDRVGLK ADQPLLPSSI RTPRNQCHKS FRAISNQGLS GNACLIVSSP  780
TLKVKNSDGH SISVTAVQCT NSPATLENLA DNAGIDTAIE NYNIFGGTPF RRSIESPSAW  840
KSPWFINSFI PGPRIDTEIT IEDMGYVMSP AERSYDAIGL IKQLSEHTAA AYADALEVLG  900
NETPKSIVKG RLSNNRNMDK ENNGVENSSH LTSNILAERR ILDFSECETP RKETENGKSS  960
TTAATVSFSG PSSYLLKGCR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-68391936159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-68391936159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1599606ERRREKKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5825943e-36JX582594.1 Gossypium hirsutum clone NBRI_GE15451 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012450680.10.0PREDICTED: uncharacterized protein LOC105773388
RefseqXP_012450681.10.0PREDICTED: uncharacterized protein LOC105773388
RefseqXP_012450682.10.0PREDICTED: uncharacterized protein LOC105773388
TrEMBLA0A0D2UA190.0A0A0D2UA19_GOSRA; Uncharacterized protein
STRINGGorai.010G110000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46742649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.10.0myb domain protein 3r-4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]