PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G105900.3
Common NameB456_010G105900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 834aa    MW: 91649.9 Da    PI: 6.0059
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G105900.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.6e-192078357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Gorai.010G105900.3 20 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78
                        5679*****************************************************97 PP
2START180.21.2e-561643722205
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++++ +s++  g+
  Gorai.010G105900.3 164 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPT-RVAEILKDRPSWYRDCRAVDVINMLSTAngGT 253
                         789*******************************************************.8888888888*****************999** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++l+a+++l+p Rdf+ +Ry+  +++g++v++++S++++q+ p+     ++vRaellpSg+li+p+++g+s +++v+h+dl+ +++
  Gorai.010G105900.3 254 IELLYMQLYAPTTLAPaRDFWLLRYTSVMEDGSLVVCERSLNNTQNGPSmppAVNFVRAELLPSGYLIRPCEGGGSIIHIVDHMDLEPWSV 344
                         ************************************************999899************************************* PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqce 205
                         +++lr+l++s++  ++kt++a+l+++++
  Gorai.010G105900.3 345 PEVLRPLYESSTLLAQKTTMAALRHLRQ 372
                         ***********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.8721579IPR001356Homeobox domain
SMARTSM003895.3E-161783IPR001356Homeobox domain
SuperFamilySSF466895.56E-172083IPR009057Homeodomain-like
CDDcd000865.58E-172080No hitNo description
PfamPF000461.1E-162178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.8E-192278IPR009057Homeodomain-like
CDDcd146861.14E-672111No hitNo description
PROSITE profilePS5084826.686154382IPR002913START domain
CDDcd088755.91E-81158373No hitNo description
Gene3DG3DSA:3.30.530.206.0E-24163369IPR023393START-like domain
SuperFamilySSF559618.79E-38163375No hitNo description
SMARTSM002343.7E-42163373IPR002913START domain
PfamPF018522.5E-54164372IPR002913START domain
PfamPF086708.1E-46696832IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MMAATSACKE GTKIAMDNGK YVRYTPEQVE ALERLYHECP KPSSMRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SHLVYENSYF  120
RQQTQNTTLA TTDTSCDSAV TSGQHHLTPQ HPPKDASPAG LLSIAEETLT EFLSKATGTA  180
VEWVQMPGMK PGPDSIGIVA ISHGCTGVAA RACGLVGLDP TRVAEILKDR PSWYRDCRAV  240
DVINMLSTAN GGTIELLYMQ LYAPTTLAPA RDFWLLRYTS VMEDGSLVVC ERSLNNTQNG  300
PSMPPAVNFV RAELLPSGYL IRPCEGGGSI IHIVDHMDLE PWSVPEVLRP LYESSTLLAQ  360
KTTMAALRHL RQISQEISQP NVTGWGRRPA ALRALSHKLS KGFNEAVNGF TDEGWSMLES  420
DGIDDVTLLV NSSPGKMMDI NFSYSNGFPS MGNAVLCAKA SMLLQNVPPA ILLRFLREHR  480
SEWADSGIDA YSAAAVKAGP CSLPVPQGGS FGGQVILPLA HTIEHEEFME VVKLENVGHY  540
QDMIMPSDIF LLQLCTGVDE NAVSTCAELI FAPIDGSFSE DSPIIPSGFR IIPLDSGMDA  600
SSPNRTLDLA STLEVGAAGN RATGDKSSCG STKSVMTIAF QFVHEMQLQE NVAIMARQYV  660
RSIIASVQRV ALALSPSFFG SHAGLGSPPG TPEAQTLARW ICQSYRCYMG DELLKHEGSE  720
FILKVLWHHT DAVLCCSLKA LPVFTFANQA GLDMLETTLV SLQDISLEKI FDENGRKTLF  780
AEFPQGFMCL QGGICLSSMG RPVSYERAVA WKVVNDEENA HCICFTFINW SFV*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the procambial cells and the developing vascular system of embryos, roots and shoots. Expressed during the early stages of revascularization after cutting experiment. {ECO:0000269|PubMed:12447534, ECO:0000269|PubMed:8575317}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451775.10.0PREDICTED: homeobox-leucine zipper protein ATHB-8-like
RefseqXP_012451776.10.0PREDICTED: homeobox-leucine zipper protein ATHB-8-like
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A0D2SQP90.0A0A0D2SQP9_GOSRA; Uncharacterized protein
STRINGGorai.010G105900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  4. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  5. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  6. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  7. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  8. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  9. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]