PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G091300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 1188aa MW: 131258 Da PI: 6.5117 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.8 | 1.8e-22 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F + Gorai.010G091300.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIR- 214 99*****************************9445444.38************************************************4. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 +++ +l+++ +r+ Gorai.010G091300.1 215 -DEKSQLLLGTRRA 227 .5666679888876 PP | |||||||
2 | Auxin_resp | 124.4 | 7.8e-41 | 252 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s rr++Gt++g+sdldpvrW+nS+Wr+L+ Gorai.010G091300.1 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKFNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQ 334 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.7E-44 | 116 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-41 | 118 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.54E-19 | 125 | 218 | No hit | No description |
PROSITE profile | PS50863 | 11.984 | 126 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-22 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-20 | 126 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.0E-35 | 252 | 334 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 23.755 | 1060 | 1153 | IPR000270 | PB1 domain |
Pfam | PF02309 | 9.5E-9 | 1065 | 1146 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.42E-8 | 1077 | 1138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1188 aa Download sequence Send to blast |
MKAPPNGFMA NSAEGERKSI NSELWHACAG PLVSLPPVGS LVIYFPQGHS EQVAASMQKE 60 TDFIPSYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VNKYDKEALL ASDIGLKQSR 120 QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVAKD LHDNTWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGTRRANRQ QPALSSSVIS 240 SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KFNKAMYTQV SLGMRFRMMF 300 ETEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVITP 360 FYICPPPFFR PRFPKQPGMP DDESDIENAF KRAMPWLGDD FGMKDAPSSI FPGLSLVQWM 420 SMQQNNQFPA AQSGFFPSMV SSNLLHNSLG TDDPAKLLNF QAPALPASNM QFNKANTNQI 480 NQLTQAPMTW PQQQQLQQLL QAPLNQQQQS LQQLQRQLPQ PPQQQPQPHL FHQQQPQPQP 540 QPQPQSQSQS QSQSQSQSQS QSQSQPQPQP ATATATATAT STAAAAAAAA ATTSKKTTDA 600 ITAAAATSIP PFSINNGIIA SNQISNQNLH QPAVYSQLQQ QQLMTSSSQS AQTTASANKT 660 SYPLTSLPQD TQIQQQMEQQ PNLMQRQLQQ TQLQQSQLQL LQQSLSQRTQ QQPQLLQLSQ 720 QGFSEQQLQL QLLQKLQQQQ QQQQQSSQQL LSPAGSLLQP QMLQQQPTHQ QSQPLQQLPL 780 SQSQSQPLGS NGFSTSMPVQ PQQVSVNQPQ IHKPFTAMRT HSGLTDGDAP SCSTSPSTNN 840 CQVSSLNFLN KNQQVPSLLV SDPLVEPAST LVQELQSKPD IRIKHELPTS KGPELSKYKS 900 TVTDQLEASS SGTSYCLDAG TNQHNFSLPT FLEGDLQSHS RNNLPFTANI DGLAPDTLLS 960 RGYDSQKDLQ NMLSNYGGNP RDIDAELSTP AISSQSFGVP NIPFKTGCSN DVAIGDTGVL 1020 NGGLWANQTQ RMRTYSKSYY TRLVCLYNFL LENSKCLVVV EIMKVQKRGS VGRSIDVTRY 1080 KGYDELRHDL ARMFGIEGQL EDPQSSDWKL VYVDHENDIL LVGDDPWEEF VSCVQSIKIL 1140 SSGEVQQMSL EGDLGNVAVP NQACSGTDSG NAWRGQYDDT SAASFNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-173 | 15 | 355 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.1109 | 0.0 | flower|seedling| flowering |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48806296 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q8RYC8 | 0.0 | ARFS_ARATH; Auxin response factor 19 | ||||
TrEMBL | A0A0D2U8Z8 | 0.0 | A0A0D2U8Z8_GOSRA; Auxin response factor (Fragment) | ||||
STRING | Gorai.010G091300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2629 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G091300.1 |