PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G087200.1
Common NameB456_010G087200, LOC105774640
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 303aa    MW: 33652.5 Da    PI: 8.338
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G087200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.68.9e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+ Ed++l d++k +G g+W+  +++ g++R++k+c++rw++yl
  Gorai.010G087200.1 14 RGAWTALEDKILTDYIKVHGEGRWRNLPKRAGLKRCGKSCRLRWLNYL 61
                        89********************************************97 PP
2Myb_DNA-binding53.17.2e-1767111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Gorai.010G087200.1  67 RGNISADEEELIIKLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                         7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.226961IPR017930Myb domain
SuperFamilySSF466899.18E-2812108IPR009057Homeodomain-like
SMARTSM007177.0E-131363IPR001005SANT/Myb domain
PfamPF002498.5E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-221568IPR009057Homeodomain-like
CDDcd001679.22E-101661No hitNo description
PROSITE profilePS5129425.38962116IPR017930Myb domain
SMARTSM007173.4E-1666114IPR001005SANT/Myb domain
PfamPF002498.6E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2469115IPR009057Homeodomain-like
CDDcd001676.24E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTAL EDKILTDYIK VHGEGRWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SADEEELIIK LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLSKRVSDRQ  120
KSPAAPSKKP EAARRGTAGN GNANGNGSGS SSTHVVRTRA TRCSKVFINP HHHTQNRDPK  180
PSSTCSNHGD HGESKTMNEL LLPIMSESEN EGTTDHISSD FTFDFNMGEF CLSDLLNSDF  240
CDVSELNYSK GFDSSPSPDQ PPLDFSDEML KEWTAAASTH CSHQRVASNL QSLPPFLENG  300
IE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3362820.0AF336282.1 Gossypium hirsutum GHMYB10 (ghmyb10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452654.10.0PREDICTED: transcription factor TT2-like
TrEMBLA0A0D2R4I20.0A0A0D2R4I2_GOSRA; Transcription factor TT2
STRINGGorai.010G087200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.15e-53MYB family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]