PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G078900.5 | ||||||||
Common Name | B456_010G078900, LOC105774263 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 451aa MW: 50725.3 Da PI: 7.0601 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 116 | 3.8e-36 | 46 | 188 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 lp+G++F+Ptd+el+ e+L++kve+k+++ + +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ Gorai.010G078900.5 46 LPAGVKFDPTDQELI-EHLEAKVEAKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTTDGLSRHFFHRPSKAYTTGTRKRRKIQtecd 134 799************.99*********5553344444434666646**********.566777899******************7333455 PP NAM 80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Gorai.010G078900.5 135 lqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 188 5544778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-38 | 42 | 207 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.848 | 46 | 207 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-16 | 47 | 188 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MNKSNLGSVS SSDLIDAKLE EHQLCGSKHC PGCGHKLEGK PDWLGLPAGV KFDPTDQELI 60 EHLEAKVEAK DMKSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTTDGLSRH FFHRPSKAYT 120 TGTRKRRKIQ TECDLQGGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKNRKPEKTN 180 WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWSDRTA TAVEVSNAND PNSRRDSGSG 240 SCSSKEVIPL RDEVTGAGVA AALSSYAAGA MDIQQLKSDH FSFTPFRKSF DEVGIGEASA 300 AREAPVQGTC EEIPEHPRPH HMAHDHHQQQ QQHQQQQQQQ QQQQHHQHHA HHQIATTAFH 360 ISRPSHPIST IITPPPLHHT SIILDEDSFH VSRIMLQNES FQEQNDTVFY TCMPHLHINS 420 SSSSINNSSN NNSSSNIINW QEGLHQVWRN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-13 | 44 | 188 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847202 | 0.0 | KC847202.1 Gossypium hirsutum NAC domain protein NAC25 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012452152.1 | 0.0 | PREDICTED: uncharacterized protein LOC105774263 isoform X9 | ||||
Swissprot | Q9M0F8 | 1e-167 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A0D2V762 | 0.0 | A0A0D2V762_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G078900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-147 | NAC domain containing protein 75 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G078900.5 |
Entrez Gene | 105774263 |
Publications ? help Back to Top | |||
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