PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G075000.1
Common NameB456_010G075000, LOC105771749
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 190aa    MW: 21949.5 Da    PI: 8.4836
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G075000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.34.7e-1267155181
                         EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEE CS
                  B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvv 81 
                         f+k+lt  dv+++ +rl++ k  +e+        +++ e+++ ++++d +g+++ ++l+ + ++  +vl++GW eF+ ++ L    Df+ 
  Gorai.010G075000.1  67 FEKQLTETDVNSKqCRLSINKVDVENAvmpllkeEEDVEKGIRVKVYDANGKEYPMTLKLWAHK-LHVLKEGWIEFCTDHALLaHQDFLK 155
                         89*******99888**********766****9996666899*****************999997.689*************985567765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.86E-1467171IPR015300DNA-binding pseudobarrel domain
PfamPF023626.2E-867157IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-1567169IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-1267157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEQKKAKKID HEEYKEIYGA ALCISSFKHL ILSPESAMNL QASLQATIDI PRVPSLNGLI  60
GRCSQPFEKQ LTETDVNSKQ CRLSINKVDV ENAVMPLLKE EEDVEKGIRV KVYDANGKEY  120
PMTLKLWAHK LHVLKEGWIE FCTDHALLAH QDFLKLWVFR NLHTQDLCFF ITSRRLQEFQ  180
PIKKRRLNA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448606.11e-140PREDICTED: putative B3 domain-containing protein At4g03170
TrEMBLA0A0D2U8061e-139A0A0D2U806_GOSRA; Uncharacterized protein
STRINGGorai.010G075000.11e-139(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.15e-24B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]