PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G073600.1
Common NameB456_010G073600, LOC105773806
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 354aa    MW: 38885.4 Da    PI: 7.5336
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G073600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000462212591255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Gorai.010G073600.1 221 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 259
                         6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.49209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.77E-6219263No hitNo description
SuperFamilySSF474595.5E-10219269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-7223265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MNRGVLQSSP LQQMTAGNLN WWNINSTMRP PPTTHLQPPS HFLPPSPPTL FPQFTPTPTS  60
SSSSSWNDNN QELPQSWSQL LFCGLMGEEE KGGIGQFQVQ PKKLENWEEQ ALQQTSNAIS  120
AVDVKQENPN NYVYGHANED FHHQASKPAW SHQIMATSSA LSPKSGVTSF SSKMLEFSGN  180
KADARQPHPD RSSECNSSAS GGAWKKARVQ PSATQSTFKV RKEKLGDRIT ALHQLVSPFG  240
KTDTASVLLE AIGYIRFLQS QIEALSLPYL GNGSGNIRQQ QPVQGERNCI FPEDPGQLLN  300
ENSMKRKGGP DRQKECDEEP KKDLRSRGLC LVPVSCTLQV GSDNGADYWA PAL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451395.10.0PREDICTED: transcription factor bHLH68-like isoform X1
SwissprotQ8S3D11e-105BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0D2SP210.0A0A0D2SP21_GOSRA; Uncharacterized protein
STRINGGorai.010G073600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-98bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]