PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G070900.1
Common NameB456_010G070900, LOC105774296
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 341aa    MW: 38553.6 Da    PI: 5.326
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G070900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.3e-35131052103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F+ k+y++++d+ ++ li+w + +nsf+v+d+ +f++++Lp yFkhsnf+SFvRQLn+YgFkkv+ ++         weF++++F +g+k+
  Gorai.010G070900.1  13 FVAKTYQMVNDPMTDVLITWGKANNSFIVIDPLDFSQRILPVYFKHSNFSSFVRQLNTYGFKKVDPDK---------WEFANEWFLRGQKH 94 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i r+k++
  Gorai.010G070900.1  95 LLKNIARRKHN 105
                         ********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.9E-519102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.03E-3210102IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-3610102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-2913102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-171336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-175163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-176476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEADSNPKIV APFVAKTYQM VNDPMTDVLI TWGKANNSFI VIDPLDFSQR ILPVYFKHSN  60
FSSFVRQLNT YGFKKVDPDK WEFANEWFLR GQKHLLKNIA RRKHNKNPFM QLKAEDLEDE  120
EIVMEIARLK EEQKSLEEEL QGMNKRLEAT ERRPQQMMEF LYKVVEDPDL LPRMMLEKER  180
TRQLNADKKR RLTMMPSNSS SSSLAVSNNS VKSEEEEDGH PGVISSPETG FDMENNFYRS  240
SYQSSPSPDQ DSKELLGQNR LHEGQLMNYG CAAVTTQLPA VMVAPSVIGN GVAVSSSGAT  300
SVAGYGDRSG QLGYFGEMAA PWMEARPRPP YPFSLLEGGF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-24510221129Heat shock factor protein 1
5d5v_B2e-24510221129Heat shock factor protein 1
5d5v_D2e-24510221129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674120.0KR067412.1 Gossypium hirsutum HSF31 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452195.10.0PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV523e-97HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A0D2UAD40.0A0A0D2UAD4_GOSRA; Uncharacterized protein
STRINGGorai.010G070900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-89heat shock transcription factor C1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]