PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G067300.1

Common Name

B456_010G067300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 346aa MW: 37804.2 Da PI: 7.1198

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G067300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.4	1.8e-29	140	195	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGG+++ t k+i+elmkv+gLt+++vkSHLQkYRl+ Gorai.010G067300.1 140 KARRCWSPDLHKRFVNALQMLGGHQVSTTKQIRELMKVEGLTNDEVKSHLQKYRLH 195 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.4E-15	138	198	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-26	138	198	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	140	195	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-5	142	193	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MASSPYELTL DCKPLTSYSM ILKSFGDQQM NDQTQKLEHV LSRLEEERLK IDAFKRELPL 60 CMQLLTNDRN SSSSCASPAL QPLPDLTFAS ISKDMEENKC SKAENDNSGK AGNGGLLIEQ 120 GKGSSNTIDG QTTISQPHRK ARRCWSPDLH KRFVNALQML GGHQVSTTKQ IRELMKVEGL 180 TNDEVKSHLQ KYRLHTRRPS LSPQPAGPQR PSLIATAVAN TNSAALTLYG AHHHPAAPHF 240 PPHFCASPVP QEFYTATTIA TPALSQRLLH HQLHLGPIHN HSSPESDING AGNHSESIED 300 NKSESGSWKG ESGDNGSDRD QRKGLAALTF GEGEESNGCD ITLKF*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MASSPYELTL DCKPLTSYSM ILKSFGDQQM NDQTQKLEHV LSRLEEERLK IDAFKRELPL  60
CMQLLTNDRN SSSSCASPAL QPLPDLTFAS ISKDMEENKC SKAENDNSGK AGNGGLLIEQ  120
GKGSSNTIDG QTTISQPHRK ARRCWSPDLH KRFVNALQML GGHQVSTTKQ IRELMKVEGL  180
TNDEVKSHLQ KYRLHTRRPS LSPQPAGPQR PSLIATAVAN TNSAALTLYG AHHHPAAPHF  240
PPHFCASPVP QEFYTATTIA TPALSQRLLH HQLHLGPIHN HSSPESDING AGNHSESIED  300
NKSESGSWKG ESGDNGSDRD QRKGLAALTF GEGEESNGCD ITLKF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed 3 days after germination, with a gradual decrease before the floral transition and remains at low levels afterward. {ECO:0000269\|PubMed:25132385}.
Uniprot	TISSUE SPECIFICITY: Specifically expressed in vascular tissues of cotyledons, rosette leaves and cauline leaves. Not detected in the vegetative shoot apical meristem. {ECO:0000269\|PubMed:25132385}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269\|PubMed:25132385}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269\|PubMed:25132385}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX605172	8e-41	JX605172.1 Gossypium hirsutum clone NBRI_GE44715 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017644453.1	1e-163	PREDICTED: myb family transcription factor EFM-like
Swissprot	Q9ZQ85	1e-42	EFM_ARATH; Myb family transcription factor EFM
TrEMBL	A0A0D2SNS7	0.0	A0A0D2SNS7_GOSRA; Uncharacterized protein
STRING	Gorai.010G067300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	8e-39	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.010G067300.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]