PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G062900.1 | ||||||||
Common Name | B456_010G062900, LOC105774521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | YABBY | ||||||||
Protein Properties | Length: 177aa MW: 19772.4 Da PI: 8.2215 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 217.6 | 3.8e-67 | 7 | 161 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a+ + + +++ + ++ e+ +++l s + ++++ + Gorai.010G062900.1 7 VVPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAASQSLSWQDI--QAPNNAIED---YRRDLGSSSKCSHNKLSM 92 579****************************************9998877655555542..222223333...333444444444444444 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ l++n +ee v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Gorai.010G062900.1 93 RP--PLPNNATEERV----VNRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 161 44..47778777766....89****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.2E-71 | 9 | 161 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.7E-8 | 104 | 154 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.0E-5 | 109 | 155 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MSSCIEVVPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAASQSL 60 SWQDIQAPNN AIEDYRRDLG SSSKCSHNKL SMRPPLPNNA TEERVVNRPP EKRQRVPSAY 120 NRFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLETNNQTK MNNGSG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012452487.1 | 1e-130 | PREDICTED: axial regulator YABBY 5-like isoform X2 | ||||
Swissprot | Q8GW46 | 2e-83 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A0D2U9P1 | 1e-129 | A0A0D2U9P1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G062900.1 | 1e-129 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5538 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 6e-86 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G062900.1 |
Entrez Gene | 105774521 |
Publications ? help Back to Top | |||
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