PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G048000.1
Common NameB456_010G048000, LOC105774537
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 416aa    MW: 45946.5 Da    PI: 9.7178
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G048000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013175197223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +Cp Cg+ F   +nL+ H+ + H
  Gorai.010G048000.1 175 SCPECGEIFMKAENLELHQAVrH 197
                         6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.411174202IPR007087Zinc finger, C2H2
PROSITE patternPS000280176197IPR007087Zinc finger, C2H2
SuperFamilySSF563992.97E-22199414No hitNo description
Gene3DG3DSA:3.90.228.101.6E-19200413IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAGPTHQRKP SKDTYHNQKK KRRPQPQPQP QKNDKPPSNW SLVKGLFFGK PQQQHQQQQQ  60
QQQQQQQQQR EHVVVDETGK KCKKMRCSGS LCSNTKIMER PVTASPELNK KRASLGSVKA  120
PVQHEPNGVV VSSSNVGSFR GLPFTRFSGC YECRMVVDPV LGMAKDPSLR TTIRSCPECG  180
EIFMKAENLE LHQAVRHAVS ELGPEDTSKN IVEIIFQSSW LKKQAPICQI DRILKVHNTP  240
KTISKFEEYR DSIKSKATKH PKKHPRCIAD GNELLRFHCT TFACSLGLNG SSNLCNSSPN  300
CNVCSIIKNG FKVAQELGNG GGPNGKGILT TATSGKAHDM AAGVEEDNGK QENRAMLVCR  360
VIAGRVKKNM EGSLEDYDSV TVAGGDVGAY SNLDELYVFN PKAILPCFVV IYRGF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11822KKKRR
21823KKKRRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.13170.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488110660.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452520.10.0PREDICTED: uncharacterized protein LOC105774537
TrEMBLA0A0D2SMQ30.0A0A0D2SMQ3_GOSRA; Uncharacterized protein
STRINGGorai.010G048000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.13e-82C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]