PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G046200.1

Common Name

B456_010G046200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 276aa MW: 29761.2 Da PI: 7.6594

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G046200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.1	1.2e-35	46	105	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++al+cprCds ntkfCyyn y+ls+PryfCk+CrryWtkGG lrn PvGgg+rk ++s Gorai.010G046200.1 46 NHQALECPRCDSLNTKFCYYNSYNLSRPRYFCKSCRRYWTKGGVLRNFPVGGGCRKARHS 105 57899***************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-24	46	103	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.9E-30	48	104	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.726	50	104	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	52	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MVIPLSICIL SVRLFPCAVQ DTHSIGGGHI FSGGGGVCYG RLRPQNHQAL ECPRCDSLNT 60 KFCYYNSYNL SRPRYFCKSC RRYWTKGGVL RNFPVGGGCR KARHSKIKPS ATITVAATAV 120 QPQLLQQQHC NQLKENTHSS SESSSLTATN FNVPATNNNN DSGGSTAEAA PAVTSHSSLI 180 NMESFTSLIT WSNNKTVPFG FGNVFTKNGE HGLTGVEELT MGLLDPTVEI ELANLDNRSK 240 GGDCGGFGPL DWEGSGGQGT TLLDLSNGDQ TYWDQN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016718772.1	1e-139	PREDICTED: dof zinc finger protein DOF5.4
TrEMBL	A0A0D2U671	0.0	A0A0D2U671_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.010G046200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4482	26	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	2e-41	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Gorai.010G046200.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]