PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G045600.1

Common Name

B456_010G045600, LOC105771530

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 328aa MW: 36826.5 Da PI: 6.809

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G045600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.6	3.2e-14	256	298	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+RK+a++ +Le +v++L++ N+ Lk Gorai.010G045600.1 256 RRQKRMIKNRESAARSRARKQAYTNQLELEVDQLKKMNSWLKR 298 69************************************98884 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.8E-10	252	311	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.117	254	299	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.63E-10	256	301	No hit	No description
Pfam	PF00170	2.9E-12	256	298	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.3E-13	256	300	No hit	No description
CDD	cd14707	5.15E-25	256	301	No hit	No description
PROSITE pattern	PS00036	0	259	274	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MGDRFMMSPN RSEGQHFPPL ASQISSLYNL TFDEVQSQLG KIGKPLNDMN LDELLRSLIA 60 VEEGGLVQNP SSFSSSSSSA ASFFLGNINL NGTLSKKTVD EVWKEIVNNG GGNVNAMDNR 120 FVQHQLTLGE TTLEDFLVRA GVINGGIQDG VIHPQQFMAI DPMAVVSQQA DWLQFQMAAV 180 QQQHHHHQQQ QMTMMDSNFN VPESVYENQV VDVGYHENQL AITMPMPAMS ATSSDSQPTA 240 ARKHRYSDVM EKTIERRQKR MIKNRESAAR SRARKQAYTN QLELEVDQLK KMNSWLKRQK 300 EVEMVLSANT NDTVPKYQLR RTSSASF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448434.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 3
Refseq	XP_016701934.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBL	A0A0D2U666	0.0	A0A0D2U666_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8KMJ5	0.0	A0A1U8KMJ5_GOSHI; ABSCISIC ACID-INSENSITIVE 5-like protein 3
STRING	Gorai.010G045600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17216	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	4e-54	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Gorai.010G045600.1
Entrez Gene	105771530

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]