PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G033500.1
Common NameB456_010G033500, LOC105774017
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 297aa    MW: 31806.2 Da    PI: 5.8117
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G033500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.81.1e-16205241135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg ++  Tp++Rrgp+g+++LCnaCGl+++ kg+
  Gorai.010G033500.1 205 CTHCGISSkaTPMMRRGPSGPRSLCNACGLFWANKGT 241
                         *****9999*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.58175110IPR010399Tify domain
SMARTSM009793.5E-775110IPR010399Tify domain
PfamPF062006.8E-1079109IPR010399Tify domain
PfamPF062033.8E-15141183IPR010402CCT domain
PROSITE profilePS5101712.431141183IPR010402CCT domain
SMARTSM004012.5E-14199252IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.367199249IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-12202251No hitNo description
Gene3DG3DSA:3.30.50.108.9E-16203245IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.76E-14204249No hitNo description
PROSITE patternPS003440205232IPR000679Zinc finger, GATA-type
PfamPF003201.6E-14205241IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MYGQSQPMNI PPQIAGSGAD VDDDVSASVS VDNHHIVTYE APSLDDGGGV DDVATNPFYA  60
TAAATSASGL DVVPRGDCAS QLTLSFRGQV YVFDAITPEK FHAVLLLLGG CELTSGPHGV  120
EMSSQNLRVG MDFPRSNQPH RAASLDRFRK KRKERCFDKK VRYGVRQEVA LRMQRNKGQF  180
TSSRKSDGDY GSCSQDDDNL ADTVCTHCGI SSKATPMMRR GPSGPRSLCN ACGLFWANKG  240
TLRDIPKKTH EHSPTPVEQG ESEPNDSDSA TAIPTESNVV PFSNGDDSAL IGIAEH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153RKKRKE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451764.10.0PREDICTED: GATA transcription factor 25-like
SwissprotQ9LRH64e-77GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A0D2U8790.0A0A0D2U879_GOSRA; Uncharacterized protein
STRINGGorai.010G033500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.34e-80GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]