PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G033400.2 | ||||||||
Common Name | B456_010G033400, LOC105773762 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GATA | ||||||||
Protein Properties | Length: 354aa MW: 38560.5 Da PI: 4.5141 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.7 | 4.9e-16 | 208 | 244 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ Gorai.010G033400.2 208 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 244 *******99*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 12.942 | 68 | 103 | IPR010399 | Tify domain |
SMART | SM00979 | 4.2E-7 | 68 | 103 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.5E-10 | 71 | 102 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.65 | 136 | 178 | IPR010402 | CCT domain |
Pfam | PF06203 | 9.8E-15 | 136 | 177 | IPR010402 | CCT domain |
SuperFamily | SSF57716 | 5.7E-12 | 201 | 257 | No hit | No description |
PROSITE profile | PS50114 | 8.893 | 202 | 258 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 6.5E-12 | 202 | 255 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.0E-14 | 206 | 249 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.97E-16 | 207 | 257 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 208 | 235 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.8E-14 | 208 | 244 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MAAANPQPLQ TRPFVDHARG TIQIEDDDGD YEDDAMDDVE DANANSVNVA EHGTGVVGGV 60 NDGGGVVMAS RTSELTLSFE GEVYVFPAVT PEKVQAVLLL LGGREIPTDV PTIEVPFDQN 120 NRGVGDLPKR SNLSRRIASL VRFREKRKER CFDKKIRYTV RKEVAQRMHR KNGQFASLKE 180 STSTSSWDSS QTDLQDGTPR PKTVVRRCQH CGVSENNTPA MRRGPAGPRT LCNACGLMWA 240 NKGTLRDLSK GGRSISMDQN EPETTIDVKP SIMEGNFPGN QDEHGNPLKD VTDGSNNASV 300 NPDEEDLHEN AEDLKNSLPV GIVHPAADDD EQEPLVELAN PSDTEIDIPS SFD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.153 | 0.0 | seedling |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48742697 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP326308 | 0.0 | KP326308.1 Gossypium barbadense JAZ18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012451321.1 | 0.0 | PREDICTED: GATA transcription factor 24-like isoform X4 | ||||
Swissprot | Q8GXL7 | 1e-70 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A0D2V4Z7 | 0.0 | A0A0D2V4Z7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G033400.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 6e-69 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G033400.2 |
Entrez Gene | 105773762 |
Publications ? help Back to Top | |||
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