PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G033400.1
Common NameB456_010G033400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 361aa    MW: 39488.6 Da    PI: 4.4598
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G033400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.75e-16208244135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Gorai.010G033400.1 208 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 244
                         *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.94268103IPR010399Tify domain
SMARTSM009794.2E-768103IPR010399Tify domain
PfamPF062003.6E-1071102IPR010399Tify domain
PROSITE profilePS5101712.65136178IPR010402CCT domain
PfamPF062031.0E-14136177IPR010402CCT domain
SuperFamilySSF577165.7E-12201257No hitNo description
PROSITE profilePS501148.893202258IPR000679Zinc finger, GATA-type
SMARTSM004016.5E-12202255IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-14206249IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.24E-16207257No hitNo description
PfamPF003207.0E-14208244IPR000679Zinc finger, GATA-type
PROSITE patternPS003440208235IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAAANPQPLQ TRPFVDHARG TIQIEDDDGD YEDDAMDDVE DANANSVNVA EHGTGVVGGV  60
NDGGGVVMAS RTSELTLSFE GEVYVFPAVT PEKVQAVLLL LGGREIPTDV PTIEVPFDQN  120
NRGVGDLPKR SNLSRRIASL VRFREKRKER CFDKKIRYTV RKEVAQRMHR KNGQFASLKE  180
STSTSSWDSS QTDLQDGTPR PKTVVRRCQH CGVSENNTPA MRRGPAGPRT LCNACGLMWA  240
NKGTLRDLSK GGRSISMDQN EPETTIDVKP SIMEGNFPGN QDEHGNPLKD VTDGSNNASV  300
NPDEEDLHEN AEDLKNSLPV GIVHPAADDD EQEVEYFFLE PLVELANPSD TEIDIPSSFD  360
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.1530.0seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487426970.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3263080.0KP326308.1 Gossypium barbadense JAZ18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451319.10.0PREDICTED: GATA transcription factor 24-like isoform X2
SwissprotQ8GXL72e-70GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A0D2V5060.0A0A0D2V506_GOSRA; Uncharacterized protein
STRINGGorai.010G033400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122941429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.28e-69ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]