PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G029000.1
Common NameB456_010G029000, LOC105774538
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 365aa    MW: 41729.6 Da    PI: 6.5796
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G029000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-092913262055
                         HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Gorai.010G029000.1 291 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 326
                         4679*****************************885 PP
2ELK37.93.7e-13246267122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK++LlrKYsgyL+sLkqE+s
  Gorai.010G029000.1 246 ELKNHLLRKYSGYLSSLKQELS 267
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.7E-23102146IPR005540KNOX1
PfamPF037909.7E-23103145IPR005540KNOX1
SMARTSM012561.2E-26153204IPR005541KNOX2
PfamPF037918.1E-23158202IPR005541KNOX2
SMARTSM011883.5E-7246267IPR005539ELK domain
PROSITE profilePS5121311.296246266IPR005539ELK domain
PfamPF037892.5E-10246267IPR005539ELK domain
PROSITE profilePS5007113.005266329IPR001356Homeobox domain
SuperFamilySSF466896.84E-20267341IPR009057Homeodomain-like
SMARTSM003898.8E-13268333IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-27271332IPR009057Homeodomain-like
CDDcd000861.29E-11278330No hitNo description
PfamPF059201.4E-16286325IPR008422Homeobox KN domain
PROSITE patternPS000270304327IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEEYNQINEN SSTSRGNFLY ASQVLASNGS PYGRTSSGSI PPVLTSFHLQ PSDQHPIVKT  60
EASASQHAQK FHYNNNNNNP LLRGHQPIHH QQKGNESSSE VEAIKAKIIA HPQYSNLLEA  120
YMDCQKVGAP PEVVVRLAAV RQEFEARQRS SVTSRDNSKD PELDQFMEAY YDMLVKYREE  180
LTRPIQEAWD FMRRIEAQLN MLGNGPVRIF NSDEKCEGVG SSEEDQDNSG GETELPEIDP  240
RAEDRELKNH LLRKYSGYLS SLKQELSKKK KKGKLPKEAR QKLLSWWELH YKWPYPSETE  300
KVALAESTGL DQKQINNWFI NQRKRHWKPS EDMQFMVMDG LHPQNAALYM DGHYMGDGPY  360
CLGP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed only in the stems.
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452521.10.0PREDICTED: homeobox protein knotted-1-like 2
SwissprotO041350.0KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A0D2U5430.0A0A0D2U543_GOSRA; Uncharacterized protein
STRINGGorai.010G029000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65662335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-145KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]