PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.010G027700.1 | ||||||||
Common Name | B456_010G027700, LOC105772736 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 595aa MW: 64237.7 Da PI: 7.0608 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.1 | 1.7e-24 | 232 | 276 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Gorai.010G027700.1 232 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 276 79****************************************985 PP | |||||||
2 | QLQ | 61.2 | 2.8e-21 | 162 | 198 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ +n+P+P++Ll +i+k Gorai.010G027700.1 162 GPFTPSQWMELEHQALIYKYITSNVPIPSNLLIPIRK 198 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.9E-12 | 162 | 198 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.641 | 163 | 198 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.2E-15 | 163 | 197 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.663 | 232 | 276 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.0E-21 | 233 | 275 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 595 aa Download sequence Send to blast |
MDIGGVVVGL EGFVGSETVV TSSLVSDPET KAKLYGSGFL KQERPGNNED VLLWRSSKLA 60 KTEGVSASEA MPLLLHDKNS LLRSNANATT SVFSDGVSAS QAMLSFSSAP KSRALSVDKS 120 SQNVTFPYFH LTSPASTRNT GYNNGGFNGE NMHGVLLGGD RGPFTPSQWM ELEHQALIYK 180 YITSNVPIPS NLLIPIRKAL GSTDFSSFSG APLKTNTLGW GAFRLGFSNN TDPEPGRCRR 240 TDGKKWRCSR DAVADQKYCE RHMNRGRHRS RKPVEGQSGH SAGATSTTTT KVMSTVSSAL 300 ASVVVPISGC SESNSLTVAQ QQFKNLQPVT APVNRLLVNK ETSGERLHES TLDLKSKENS 360 FLMPMQQLIT YEENLRNEFG VVFSDSLLNP SHNDSSLINC RTFGSSQDLI CQATESQHSL 420 REFIDDWPKS QSDRSTISWP EVDVKSDMTQ LSISIPMAAS DFMSSTSSPS NEKLSSSPLR 480 LSREFDTMHM GLGVGSVINE PNHKQANWIP ISWENSMGGP LGEVLHSTNS SALNLITCDD 540 WNNSHGQRLA SSPTGVLTKT TFGSVSNSSA GSSPRPENDL LGSTLVHTSS LPAL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ566978 | 1e-74 | AJ566978.1 Gossypium hirsutum microsatellite DNA mGhCIR029, clone CIR029. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012449607.1 | 0.0 | PREDICTED: growth-regulating factor 1-like isoform X1 | ||||
TrEMBL | A0A0D2R0W5 | 0.0 | A0A0D2R0W5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G027700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1454 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22840.1 | 1e-105 | growth-regulating factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.010G027700.1 |
Entrez Gene | 105772736 |
Publications ? help Back to Top | |||
---|---|---|---|
|