PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G025100.2

Common Name

B456_010G025100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 198aa MW: 21160.1 Da PI: 4.9411

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G025100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	29.2	2.5e-09	56	97	57	98
DUF260 57 amsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 + sl++eA+ r+ +Pv+Gavg++++++++++q++ e++l++ Gorai.010G025100.2 56 NVPSLLFEACGRTVNPVNGAVGLLSSGNWHICQAALETVLQG 97 5789******************************99988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	8.6E-6	49	93	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MAAEFYEKDA ARHVCYDLVY GGLNRLKLKA TLPCFSLSFL AGVISFRLSP PSLNLNVPSL 60 LFEACGRTVN PVNGAVGLLS SGNWHICQAA LETVLQGGAL RPISAGSWTP SCDESSDRFC 120 VNSCNFESKP LTTSMMMTGN QSVLTAPSDL SLSVTAKLGG EMRNKTVSFY SEESEITTLG 180 SNGNEETQDT KILNLFV*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012450312.1	3e-96	PREDICTED: LOB domain-containing protein 39-like
Swissprot	Q9SZE8	7e-27	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A0D2V4J9	1e-142	A0A0D2V4J9_GOSRA; Uncharacterized protein
STRING	Gorai.010G025100.1	1e-95	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	5e-26	LOB domain-containing protein 39

Link Out ? help Back to Top
Phytozome	Gorai.010G025100.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]