PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G025100.1 | ||||||||
Common Name | B456_010G025100, LOC105773158 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 205aa MW: 21908.8 Da PI: 4.9851 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89.1 | 5.7e-28 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C++ Cvl+ + +++q +++ +++k+FG+s +l+l++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++ Gorai.010G025100.1 2 SCNGCRVLRKGCSETCVLRSSLrwiesAEAQGNATLFLAKFFGRSDLLSLISSVPESQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWH 92 6*********************9999777889*********************************************************** PP DUF260 87 leqlkaelallk 98 ++q++ e++l++ Gorai.010G025100.1 93 ICQAALETVLQG 104 ****99988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.456 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.2E-24 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCVLR SSLRWIESAE AQGNATLFLA KFFGRSDLLS LISSVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHICQAALET VLQGGALRPI SAGSWTPSCD 120 ESSDRFCVNS CNFESKPLTT SMMMTGNQSV LTAPSDLSLS VTAKLGGEMR NKTVSFYSEE 180 SEITTLGSNG NEETQDTKIL NLFV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012450312.1 | 1e-147 | PREDICTED: LOB domain-containing protein 39-like | ||||
Swissprot | Q9SZE8 | 4e-68 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A0D2U7Q1 | 1e-146 | A0A0D2U7Q1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G025100.1 | 1e-147 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 2e-70 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G025100.1 |
Entrez Gene | 105773158 |
Publications ? help Back to Top | |||
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