PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G007800.1 | ||||||||
Common Name | B456_010G007800, LOC105772488 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 527aa MW: 59294.4 Da PI: 6.7521 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.5 | 1.3e-09 | 301 | 338 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LAk++gLt +qV +WF N R + Gorai.010G007800.1 301 FEHflHPYPKDSEKIMLAKQTGLTRNQVANWFINARVR 338 664459******************************88 PP | |||||||
2 | BELL | 129.5 | 1.2e-41 | 164 | 235 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk+kLls+l+eVd+rY+qy++q+++++ssF+ vag+g+akpYtslAl++iSrhFrcL+dai++qi Gorai.010G007800.1 164 ERQELQNKKTKLLSMLDEVDRRYRQYYHQMKILVSSFDSVAGCGAAKPYTSLALQTISRHFRCLRDAISNQI 235 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.3E-58 | 103 | 233 | IPR006563 | POX domain |
Pfam | PF07526 | 2.1E-48 | 109 | 232 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.406 | 279 | 342 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.65E-12 | 282 | 343 | No hit | No description |
SMART | SM00389 | 6.7E-10 | 282 | 346 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.84E-17 | 283 | 349 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-28 | 285 | 348 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.3E-17 | 299 | 338 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MATYYPSFTN RRDDLSIQDE KPVPYRASSM GEFTEILSGT SLIPPCSDSL QSVNGRLNIT 60 MSAVNCQSQG LSLSLGSEIP PDVSLPSLPC QYQAYSDIYQ FQPGFTSTIS NSKYLKVVQE 120 LLNEVINVQQ ALRQSDFDKN VSSQLKSSES NESVNNLSKI SPTERQELQN KKTKLLSMLD 180 EVDRRYRQYY HQMKILVSSF DSVAGCGAAK PYTSLALQTI SRHFRCLRDA ISNQIQLTQR 240 SLGEHDNSSN NQGSVIPRLR YVDHQLRQQR ALQQFGVMRN AWRPQRGLPE SSVSVLRAWL 300 FEHFLHPYPK DSEKIMLAKQ TGLTRNQVAN WFINARVRLW KPMIEEMYKE EFGEMDSNFK 360 SSLENAAKAT GENSSASEDR GEELHENITS KVACADNIQP GQVLYPKPDH IPDVEPNRPT 420 ARSMYQNIAN PYPNTVIPSN QHGHGTLMTG DTVYDLTELN GFAVGNQVSL ALGLRNHENK 480 VFTMSGSTNH KVDSSVGPET VDFRFMEPGN QQDRFGNPHI LHDFVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 7e-16 | 288 | 346 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 7e-16 | 288 | 346 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012449208.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 7 | ||||
TrEMBL | A0A0D2R025 | 0.0 | A0A0D2R025_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G007800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2869 | 25 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16400.1 | 1e-120 | BEL1-like homeodomain 7 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G007800.1 |
Entrez Gene | 105772488 |
Publications ? help Back to Top | |||
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