PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G451700.7

Common Name

B456_009G451700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 751aa MW: 84454.8 Da PI: 6.3899

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G451700.7	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.9	4.6e-05	523	583	1	54
TT--SS--HHHHHHHHHHHHHSSS--HHH..HHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaee..reeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt +++eq++++e++ ++ +++++ ++ A+kl ++t +q ++W Nr+a+ Gorai.009G451700.7 523 KRKRTIMNDEQVTIMERALLDEPEMQRNTalIQSWADKLshhgsEVTCSQLRNWLNNRKAR 583 79****************988887654449**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.9E-5	518	591	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.782	520	587	IPR001356	Homeobox domain
SMART	SM00389	2.9E-4	522	591	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.1E-4	523	590	IPR009057	Homeodomain-like
CDD	cd00086	2.28E-4	523	586	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0060195	Biological Process	negative regulation of antisense RNA transcription
GO:0005730	Cellular Component	nucleolus
GO:0003697	Molecular Function	single-stranded DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 751 aa Download sequence Send to blast
MVAHPKVDMF MDVACRAIHL VVRFLQNKLS VQHIEICVKS SSSTESMVNY LCQQCEASLQ 60 FLQLLCQQKP FRERILKNKE LCGKGGILFL AQSILKLHAP DFAESSAIVA ALSRLKAKVL 120 SILLHLCEAE SISYLDEVAS SPASLDLAKS VAFEVLELLK TGLSKNPKHL SASSDRTYPM 180 GLLQLNAMRL ADIFSDDSNF RSYITVYFTE ILSAIFSLSH GDFLSMWCSA DLPVREEDAT 240 LYYEVFAAAG WALDSVSSLD LSNTSNLEFT FIPNSNMSQA SYVHQRTSLF VKIIANLHCF 300 VPNICEEQER NLFLHKFLGC LRMDPSKLLP SYAFITGPQK ASAVQRNLRS LLSHAESLIP 360 TFLNEDDLQL LRVFFDQLQS LMNPSEFEEN RVQDDRSLGG CSSPLLRREP PNLNNRNGNL 420 KEEMSENSAF QEEHFYVRNS HMDQADGVTR RDMMDDKDKS ITPSGLKEID RDVQNVETSG 480 SDTSSTKGKN AVDKLAERHR ENADVREDEK VETVQTEEKH RRKRKRTIMN DEQVTIMERA 540 LLDEPEMQRN TALIQSWADK LSHHGSEVTC SQLRNWLNNR KARLARLSKD ARPPPEPDNA 600 FAGKQGGPQQ GHSLRAPDSP GQETTPSNTR GTRSMSRMNT SENPVAPEFV DYGAAEFVQC 660 KPGQFIVLVD GRGQEIGKGK VHQVQGKWWG KSLEESGTCV VDVVDLKADR WVKLPYPSES 720 TGTSFEDAEK KLGVMRVMWD SNKIFMLRPQ *

Sequence ? help Back to Top

Protein Sequence Length: 751 aa Download sequence Send to blast

MVAHPKVDMF MDVACRAIHL VVRFLQNKLS VQHIEICVKS SSSTESMVNY LCQQCEASLQ  60
FLQLLCQQKP FRERILKNKE LCGKGGILFL AQSILKLHAP DFAESSAIVA ALSRLKAKVL  120
SILLHLCEAE SISYLDEVAS SPASLDLAKS VAFEVLELLK TGLSKNPKHL SASSDRTYPM  180
GLLQLNAMRL ADIFSDDSNF RSYITVYFTE ILSAIFSLSH GDFLSMWCSA DLPVREEDAT  240
LYYEVFAAAG WALDSVSSLD LSNTSNLEFT FIPNSNMSQA SYVHQRTSLF VKIIANLHCF  300
VPNICEEQER NLFLHKFLGC LRMDPSKLLP SYAFITGPQK ASAVQRNLRS LLSHAESLIP  360
TFLNEDDLQL LRVFFDQLQS LMNPSEFEEN RVQDDRSLGG CSSPLLRREP PNLNNRNGNL  420
KEEMSENSAF QEEHFYVRNS HMDQADGVTR RDMMDDKDKS ITPSGLKEID RDVQNVETSG  480
SDTSSTKGKN AVDKLAERHR ENADVREDEK VETVQTEEKH RRKRKRTIMN DEQVTIMERA  540
LLDEPEMQRN TALIQSWADK LSHHGSEVTC SQLRNWLNNR KARLARLSKD ARPPPEPDNA  600
FAGKQGGPQQ GHSLRAPDSP GQETTPSNTR GTRSMSRMNT SENPVAPEFV DYGAAEFVQC  660
KPGQFIVLVD GRGQEIGKGK VHQVQGKWWG KSLEESGTCV VDVVDLKADR WVKLPYPSES  720
TGTSFEDAEK KLGVMRVMWD SNKIFMLRPQ *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	520	525	RRKRKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012444042.1	0.0	PREDICTED: uncharacterized protein LOC105768587
Refseq	XP_012444043.1	0.0	PREDICTED: uncharacterized protein LOC105768587
TrEMBL	A0A0D2QYW1	0.0	A0A0D2QYW1_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2U519	0.0	A0A0D2U519_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2V2G2	0.0	A0A0D2V2G2_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.009G451700.1	0.0	(Gossypium raimondii)

Link Out ? help Back to Top
Phytozome	Gorai.009G451700.7

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]