PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G451700.5

Common Name

B456_009G451700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 914aa MW: 102998 Da PI: 5.9578

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G451700.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.6	5.8e-05	686	746	1	54
TT--SS--HHHHHHHHHHHHHSSS--HHH..HHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaee..reeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt +++eq++++e++ ++ +++++ ++ A+kl ++t +q ++W Nr+a+ Gorai.009G451700.5 686 KRKRTIMNDEQVTIMERALLDEPEMQRNTalIQSWADKLshhgsEVTCSQLRNWLNNRKAR 746 79****************988887654449**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.782	683	750	IPR001356	Homeobox domain
SMART	SM00389	2.9E-4	685	754	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.7E-4	686	753	IPR009057	Homeodomain-like
CDD	cd00086	2.38E-4	686	749	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0060195	Biological Process	negative regulation of antisense RNA transcription
GO:0005730	Cellular Component	nucleolus
GO:0003697	Molecular Function	single-stranded DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 914 aa Download sequence Send to blast
YQLCSLAFSH TLFAARFLNM RQGEGEAIST VEQAIDLISV VKEIHGLNSQ ELNKLLRDSE 60 NFTILFVTEQ GLDVKIDVEK LAGFLPLHLI AVLVSSDRDE ALLRYLLCGI RILHSLCELA 120 PRHTKLEQIL LDDVKVSEQL IDLVFYVLIV LNDYRQWQDL ALVMVAHPKV DMFMDVACRA 180 IHLVVRFLQN KLSVQHIEIC VKSSSSTESM VNYLCQQCEA SLQFLQLLCQ QKPFRERILK 240 NKELCGKGGI LFLAQSILKL HAPDFAESSA IVAALSRLKA KVLSILLHLC EAESISYLDE 300 VASSPASLDL AKSVAFEVLE LLKTGLSKNP KHLSASSDRT YPMGLLQLNA MRLADIFSDD 360 SNFRSYITVY FTEILSAIFS LSHGDFLSMW CSADLPVREE DATLYYEVFA AAGWALDSVS 420 SLDLSNTSNL EFTFIPNSNM SQASYVHQRT SLFVKIIANL HCFVPNICEE QERNLFLHKF 480 LGCLRMDPSK LLPSYAFITG PQKASAVQRN LRSLLSHAES LIPTFLNEDD LQLLRVFFDQ 540 LQSLMNPSEF EENRVQDDRS LGGCSSPLLR REPPNLNNRN GNLKEEMSEN SAFQEEHFYV 600 RNSHMDQADG VTRRDMMDDK DKSITPSGLK EIDRDVQNVE TSGSDTSSTK GKNAVDKLAE 660 RHRENADVRE DEKVETVQTE EKHRRKRKRT IMNDEQVTIM ERALLDEPEM QRNTALIQSW 720 ADKLSHHGSE VTCSQLRNWL NNRKARLARL SKDARPPPEP DNAFAGKQGG PQQGHSLRAP 780 DSPGQETTPS NTRGTRSMSR MNTSENPVAP EFVDYGAAEF VQCKPGQFIV LVDGRGQEIG 840 KGKVHQVQGK WWGKSLEESG TCVVDVVDLK ADRWVKLPYP SESTGTSFED AEKKLGVMRV 900 MWDSNKIFML RPQ*

Sequence ? help Back to Top

Protein Sequence Length: 914 aa Download sequence Send to blast

YQLCSLAFSH TLFAARFLNM RQGEGEAIST VEQAIDLISV VKEIHGLNSQ ELNKLLRDSE  60
NFTILFVTEQ GLDVKIDVEK LAGFLPLHLI AVLVSSDRDE ALLRYLLCGI RILHSLCELA  120
PRHTKLEQIL LDDVKVSEQL IDLVFYVLIV LNDYRQWQDL ALVMVAHPKV DMFMDVACRA  180
IHLVVRFLQN KLSVQHIEIC VKSSSSTESM VNYLCQQCEA SLQFLQLLCQ QKPFRERILK  240
NKELCGKGGI LFLAQSILKL HAPDFAESSA IVAALSRLKA KVLSILLHLC EAESISYLDE  300
VASSPASLDL AKSVAFEVLE LLKTGLSKNP KHLSASSDRT YPMGLLQLNA MRLADIFSDD  360
SNFRSYITVY FTEILSAIFS LSHGDFLSMW CSADLPVREE DATLYYEVFA AAGWALDSVS  420
SLDLSNTSNL EFTFIPNSNM SQASYVHQRT SLFVKIIANL HCFVPNICEE QERNLFLHKF  480
LGCLRMDPSK LLPSYAFITG PQKASAVQRN LRSLLSHAES LIPTFLNEDD LQLLRVFFDQ  540
LQSLMNPSEF EENRVQDDRS LGGCSSPLLR REPPNLNNRN GNLKEEMSEN SAFQEEHFYV  600
RNSHMDQADG VTRRDMMDDK DKSITPSGLK EIDRDVQNVE TSGSDTSSTK GKNAVDKLAE  660
RHRENADVRE DEKVETVQTE EKHRRKRKRT IMNDEQVTIM ERALLDEPEM QRNTALIQSW  720
ADKLSHHGSE VTCSQLRNWL NNRKARLARL SKDARPPPEP DNAFAGKQGG PQQGHSLRAP  780
DSPGQETTPS NTRGTRSMSR MNTSENPVAP EFVDYGAAEF VQCKPGQFIV LVDGRGQEIG  840
KGKVHQVQGK WWGKSLEESG TCVVDVVDLK ADRWVKLPYP SESTGTSFED AEKKLGVMRV  900
MWDSNKIFML RPQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	683	688	RRKRKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012444042.1	0.0	PREDICTED: uncharacterized protein LOC105768587
Refseq	XP_012444043.1	0.0	PREDICTED: uncharacterized protein LOC105768587
TrEMBL	A0A0D2V2G2	0.0	A0A0D2V2G2_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.009G451700.1	0.0	(Gossypium raimondii)

Link Out ? help Back to Top
Phytozome	Gorai.009G451700.5

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]