PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G451700.3

Common Name

B456_009G451700, LOC105768587

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 925aa MW: 103902 Da PI: 5.7193

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G451700.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.5	5.9e-05	697	757	1	54
TT--SS--HHHHHHHHHHHHHSSS--HHH..HHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaee..reeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt +++eq++++e++ ++ +++++ ++ A+kl ++t +q ++W Nr+a+ Gorai.009G451700.3 697 KRKRTIMNDEQVTIMERALLDEPEMQRNTalIQSWADKLshhgsEVTCSQLRNWLNNRKAR 757 79****************988887654449**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.782	694	761	IPR001356	Homeobox domain
SMART	SM00389	2.9E-4	696	765	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.8E-4	697	764	IPR009057	Homeodomain-like
CDD	cd00086	1.77E-4	697	760	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0060195	Biological Process	negative regulation of antisense RNA transcription
GO:0005730	Cellular Component	nucleolus
GO:0003697	Molecular Function	single-stranded DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 925 aa Download sequence Send to blast
MRQGEGEAIS TVEQAIDLIS VVKEIHGLNS QELNKLLRDS ENFTILFVTE QGLDVKIDVE 60 KLAGFLPLHL IAVLVSSDRD EALLRYLLCG IRILHSLCEL APRHTKLEQI LLDDVKVSEQ 120 LIDLVFYVLI VLNDYRQDIH DSGPVPVLLS ALVACSFYLL TGCISSQWQD LALVMVAHPK 180 VDMFMDVACR AIHLVVRFLQ NKLSVQHIEI CVKSSSSTES MVNYLCQQCE ASLQFLQLLC 240 QQKPFRERIL KNKELCGKGG ILFLAQSILK LHAPDFAESS AIVAALSRLK AKVLSILLHL 300 CEAESISYLD EVASSPASLD LAKSVAFEVL ELLKTGLSKN PKHLSASSDR TYPMGLLQLN 360 AMRLADIFSD DSNFRSYITV YFTEILSAIF SLSHGDFLSM WCSADLPVRE EDATLYYEVF 420 AAAGWALDSV SSLDLSNTSN LEFTFIPNSN MSQASYVHQR TSLFVKIIAN LHCFVPNICE 480 EQERNLFLHK FLGCLRMDPS KLLPSYAFIT GPQKASAVQR NLRSLLSHAE SLIPTFLNED 540 DLQLLRVFFD QLQSLMNPSE FEENRVQDDR SLGGCSSPLL RREPPNLNNR NGNLKEEMSE 600 NSAFQEEHFY VRNSHMDQAD GVTRRDMMDD KDKSITPSGL KEIDRDVQNV ETSGSDTSST 660 KGKNAVDKLA ERHRENADVR EDEKVETVQT EEKHRRKRKR TIMNDEQVTI MERALLDEPE 720 MQRNTALIQS WADKLSHHGS EVTCSQLRNW LNNRKARLAR LSKDARPPPE PDNAFAGKQG 780 GPQQGHSLRA PDSPGQETTP SNTRGTRSMS RMNTSENPVA PEFVDYGAAE FVQCKPGQFI 840 VLVDGRGQEI GKGKVHQVQG KWWGKSLEES GTCVVDVVDL KADRWVKLPY PSESTGTSFE 900 DAEKKLGVMR VMWDSNKIFM LRPQ*

Sequence ? help Back to Top

Protein Sequence Length: 925 aa Download sequence Send to blast

MRQGEGEAIS TVEQAIDLIS VVKEIHGLNS QELNKLLRDS ENFTILFVTE QGLDVKIDVE  60
KLAGFLPLHL IAVLVSSDRD EALLRYLLCG IRILHSLCEL APRHTKLEQI LLDDVKVSEQ  120
LIDLVFYVLI VLNDYRQDIH DSGPVPVLLS ALVACSFYLL TGCISSQWQD LALVMVAHPK  180
VDMFMDVACR AIHLVVRFLQ NKLSVQHIEI CVKSSSSTES MVNYLCQQCE ASLQFLQLLC  240
QQKPFRERIL KNKELCGKGG ILFLAQSILK LHAPDFAESS AIVAALSRLK AKVLSILLHL  300
CEAESISYLD EVASSPASLD LAKSVAFEVL ELLKTGLSKN PKHLSASSDR TYPMGLLQLN  360
AMRLADIFSD DSNFRSYITV YFTEILSAIF SLSHGDFLSM WCSADLPVRE EDATLYYEVF  420
AAAGWALDSV SSLDLSNTSN LEFTFIPNSN MSQASYVHQR TSLFVKIIAN LHCFVPNICE  480
EQERNLFLHK FLGCLRMDPS KLLPSYAFIT GPQKASAVQR NLRSLLSHAE SLIPTFLNED  540
DLQLLRVFFD QLQSLMNPSE FEENRVQDDR SLGGCSSPLL RREPPNLNNR NGNLKEEMSE  600
NSAFQEEHFY VRNSHMDQAD GVTRRDMMDD KDKSITPSGL KEIDRDVQNV ETSGSDTSST  660
KGKNAVDKLA ERHRENADVR EDEKVETVQT EEKHRRKRKR TIMNDEQVTI MERALLDEPE  720
MQRNTALIQS WADKLSHHGS EVTCSQLRNW LNNRKARLAR LSKDARPPPE PDNAFAGKQG  780
GPQQGHSLRA PDSPGQETTP SNTRGTRSMS RMNTSENPVA PEFVDYGAAE FVQCKPGQFI  840
VLVDGRGQEI GKGKVHQVQG KWWGKSLEES GTCVVDVVDL KADRWVKLPY PSESTGTSFE  900
DAEKKLGVMR VMWDSNKIFM LRPQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	694	699	RRKRKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012444042.1	0.0	PREDICTED: uncharacterized protein LOC105768587
Refseq	XP_012444043.1	0.0	PREDICTED: uncharacterized protein LOC105768587
TrEMBL	A0A0D2U519	0.0	A0A0D2U519_GOSRA; Uncharacterized protein
STRING	Gorai.009G451700.1	0.0	(Gossypium raimondii)

Link Out ? help Back to Top
Phytozome	Gorai.009G451700.3
Entrez Gene	105768587

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]