PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G451700.3 | ||||||||
Common Name | B456_009G451700, LOC105768587 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HB-other | ||||||||
Protein Properties | Length: 925aa MW: 103902 Da PI: 5.7193 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 14.5 | 5.9e-05 | 697 | 757 | 1 | 54 |
TT--SS--HHHHHHHHHHHHHSSS--HHH..HHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaee..reeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt +++eq++++e++ ++ +++++ ++ A+kl ++t +q ++W Nr+a+ Gorai.009G451700.3 697 KRKRTIMNDEQVTIMERALLDEPEMQRNTalIQSWADKLshhgsEVTCSQLRNWLNNRKAR 757 79******************988887654449****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.782 | 694 | 761 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-4 | 696 | 765 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-4 | 697 | 764 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.77E-4 | 697 | 760 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0060195 | Biological Process | negative regulation of antisense RNA transcription | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 925 aa Download sequence Send to blast |
MRQGEGEAIS TVEQAIDLIS VVKEIHGLNS QELNKLLRDS ENFTILFVTE QGLDVKIDVE 60 KLAGFLPLHL IAVLVSSDRD EALLRYLLCG IRILHSLCEL APRHTKLEQI LLDDVKVSEQ 120 LIDLVFYVLI VLNDYRQDIH DSGPVPVLLS ALVACSFYLL TGCISSQWQD LALVMVAHPK 180 VDMFMDVACR AIHLVVRFLQ NKLSVQHIEI CVKSSSSTES MVNYLCQQCE ASLQFLQLLC 240 QQKPFRERIL KNKELCGKGG ILFLAQSILK LHAPDFAESS AIVAALSRLK AKVLSILLHL 300 CEAESISYLD EVASSPASLD LAKSVAFEVL ELLKTGLSKN PKHLSASSDR TYPMGLLQLN 360 AMRLADIFSD DSNFRSYITV YFTEILSAIF SLSHGDFLSM WCSADLPVRE EDATLYYEVF 420 AAAGWALDSV SSLDLSNTSN LEFTFIPNSN MSQASYVHQR TSLFVKIIAN LHCFVPNICE 480 EQERNLFLHK FLGCLRMDPS KLLPSYAFIT GPQKASAVQR NLRSLLSHAE SLIPTFLNED 540 DLQLLRVFFD QLQSLMNPSE FEENRVQDDR SLGGCSSPLL RREPPNLNNR NGNLKEEMSE 600 NSAFQEEHFY VRNSHMDQAD GVTRRDMMDD KDKSITPSGL KEIDRDVQNV ETSGSDTSST 660 KGKNAVDKLA ERHRENADVR EDEKVETVQT EEKHRRKRKR TIMNDEQVTI MERALLDEPE 720 MQRNTALIQS WADKLSHHGS EVTCSQLRNW LNNRKARLAR LSKDARPPPE PDNAFAGKQG 780 GPQQGHSLRA PDSPGQETTP SNTRGTRSMS RMNTSENPVA PEFVDYGAAE FVQCKPGQFI 840 VLVDGRGQEI GKGKVHQVQG KWWGKSLEES GTCVVDVVDL KADRWVKLPY PSESTGTSFE 900 DAEKKLGVMR VMWDSNKIFM LRPQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 694 | 699 | RRKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012444042.1 | 0.0 | PREDICTED: uncharacterized protein LOC105768587 | ||||
Refseq | XP_012444043.1 | 0.0 | PREDICTED: uncharacterized protein LOC105768587 | ||||
TrEMBL | A0A0D2U519 | 0.0 | A0A0D2U519_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G451700.1 | 0.0 | (Gossypium raimondii) |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G451700.3 |
Entrez Gene | 105768587 |
Publications ? help Back to Top | |||
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