PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G451700.2 | ||||||||
Common Name | B456_009G451700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HB-other | ||||||||
Protein Properties | Length: 895aa MW: 100814 Da PI: 5.8125 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 14.6 | 5.7e-05 | 667 | 727 | 1 | 54 |
TT--SS--HHHHHHHHHHHHHSSS--HHH..HHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaee..reeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt +++eq++++e++ ++ +++++ ++ A+kl ++t +q ++W Nr+a+ Gorai.009G451700.2 667 KRKRTIMNDEQVTIMERALLDEPEMQRNTalIQSWADKLshhgsEVTCSQLRNWLNNRKAR 727 79******************988887654449****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.782 | 664 | 731 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-4 | 666 | 735 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.32E-4 | 667 | 730 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-4 | 667 | 734 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0060195 | Biological Process | negative regulation of antisense RNA transcription | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 895 aa Download sequence Send to blast |
MRQGEGEAIS TVEQAIDLIS VVKEIHGLNS QELNKLLRDS ENFTILFVTE QGLDVKIDVE 60 KLAGFLPLHL IAVLVSSDRD EALLRYLLCG IRILHSLCEL APRHTKLEQI LLDDVKVSEQ 120 LIDLVFYVLI VLNDYRQWQD LALVMVAHPK VDMFMDVACR AIHLVVRFLQ NKLSVQHIEI 180 CVKSSSSTES MVNYLCQQCE ASLQFLQLLC QQKPFRERIL KNKELCGKGG ILFLAQSILK 240 LHAPDFAESS AIVAALSRLK AKVLSILLHL CEAESISYLD EVASSPASLD LAKSVAFEVL 300 ELLKTGLSKN PKHLSASSDR TYPMGLLQLN AMRLADIFSD DSNFRSYITV YFTEILSAIF 360 SLSHGDFLSM WCSADLPVRE EDATLYYEVF AAAGWALDSV SSLDLSNTSN LEFTFIPNSN 420 MSQASYVHQR TSLFVKIIAN LHCFVPNICE EQERNLFLHK FLGCLRMDPS KLLPSYAFIT 480 GPQKASAVQR NLRSLLSHAE SLIPTFLNED DLQLLRVFFD QLQSLMNPSE FEENRVQDDR 540 SLGGCSSPLL RREPPNLNNR NGNLKEEMSE NSAFQEEHFY VRNSHMDQAD GVTRRDMMDD 600 KDKSITPSGL KEIDRDVQNV ETSGSDTSST KGKNAVDKLA ERHRENADVR EDEKVETVQT 660 EEKHRRKRKR TIMNDEQVTI MERALLDEPE MQRNTALIQS WADKLSHHGS EVTCSQLRNW 720 LNNRKARLAR LSKDARPPPE PDNAFAGKQG GPQQGHSLRA PDSPGQETTP SNTRGTRSMS 780 RMNTSENPVA PEFVDYGAAE FVQCKPGQFI VLVDGRGQEI GKGKVHQVQG KWWGKSLEES 840 GTCVVDVVDL KADRWVKLPY PSESTGTSFE DAEKKLGVMR VMWDSNKIFM LRPQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 664 | 669 | RRKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012444042.1 | 0.0 | PREDICTED: uncharacterized protein LOC105768587 | ||||
Refseq | XP_012444043.1 | 0.0 | PREDICTED: uncharacterized protein LOC105768587 | ||||
TrEMBL | A0A0D2V2G2 | 0.0 | A0A0D2V2G2_GOSRA; Uncharacterized protein (Fragment) | ||||
STRING | Gorai.009G451700.1 | 0.0 | (Gossypium raimondii) |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G451700.2 |
Publications ? help Back to Top | |||
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