PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G451700.2
Common NameB456_009G451700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 895aa    MW: 100814 Da    PI: 5.8125
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G451700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.65.7e-05667727154
                         TT--SS--HHHHHHHHHHHHHSSS--HHH..HHHHHHHC.....TS-HHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaee..reeLAkkl.....gLterqVkvWFqNrRak 54 
                         +rkRt +++eq++++e++   ++ +++++  ++  A+kl     ++t +q ++W  Nr+a+
  Gorai.009G451700.2 667 KRKRTIMNDEQVTIMERALLDEPEMQRNTalIQSWADKLshhgsEVTCSQLRNWLNNRKAR 727
                         79******************988887654449****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.782664731IPR001356Homeobox domain
SMARTSM003892.9E-4666735IPR001356Homeobox domain
CDDcd000862.32E-4667730No hitNo description
Gene3DG3DSA:1.10.10.602.7E-4667734IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0060195Biological Processnegative regulation of antisense RNA transcription
GO:0005730Cellular Componentnucleolus
GO:0003697Molecular Functionsingle-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    Send to blast
MRQGEGEAIS TVEQAIDLIS VVKEIHGLNS QELNKLLRDS ENFTILFVTE QGLDVKIDVE  60
KLAGFLPLHL IAVLVSSDRD EALLRYLLCG IRILHSLCEL APRHTKLEQI LLDDVKVSEQ  120
LIDLVFYVLI VLNDYRQWQD LALVMVAHPK VDMFMDVACR AIHLVVRFLQ NKLSVQHIEI  180
CVKSSSSTES MVNYLCQQCE ASLQFLQLLC QQKPFRERIL KNKELCGKGG ILFLAQSILK  240
LHAPDFAESS AIVAALSRLK AKVLSILLHL CEAESISYLD EVASSPASLD LAKSVAFEVL  300
ELLKTGLSKN PKHLSASSDR TYPMGLLQLN AMRLADIFSD DSNFRSYITV YFTEILSAIF  360
SLSHGDFLSM WCSADLPVRE EDATLYYEVF AAAGWALDSV SSLDLSNTSN LEFTFIPNSN  420
MSQASYVHQR TSLFVKIIAN LHCFVPNICE EQERNLFLHK FLGCLRMDPS KLLPSYAFIT  480
GPQKASAVQR NLRSLLSHAE SLIPTFLNED DLQLLRVFFD QLQSLMNPSE FEENRVQDDR  540
SLGGCSSPLL RREPPNLNNR NGNLKEEMSE NSAFQEEHFY VRNSHMDQAD GVTRRDMMDD  600
KDKSITPSGL KEIDRDVQNV ETSGSDTSST KGKNAVDKLA ERHRENADVR EDEKVETVQT  660
EEKHRRKRKR TIMNDEQVTI MERALLDEPE MQRNTALIQS WADKLSHHGS EVTCSQLRNW  720
LNNRKARLAR LSKDARPPPE PDNAFAGKQG GPQQGHSLRA PDSPGQETTP SNTRGTRSMS  780
RMNTSENPVA PEFVDYGAAE FVQCKPGQFI VLVDGRGQEI GKGKVHQVQG KWWGKSLEES  840
GTCVVDVVDL KADRWVKLPY PSESTGTSFE DAEKKLGVMR VMWDSNKIFM LRPQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1664669RRKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444042.10.0PREDICTED: uncharacterized protein LOC105768587
RefseqXP_012444043.10.0PREDICTED: uncharacterized protein LOC105768587
TrEMBLA0A0D2V2G20.0A0A0D2V2G2_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.009G451700.10.0(Gossypium raimondii)
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]